Hi!
I am a new user of amber. I am facing a problem as soon as I am going to prepare the topology file and coordinate file from a pdb file of a small fraction of DNA.
As I run the dna1=loadpdb it shows some error message as follows-
"the file contained 192 atoms not in the residue templates" [Note: The corresponding pdb file and log file is attached here. Please find it.]
I want to know what is the problem and how to rectify it. I also want to know from where I can get the "residue templates". And I have another question in my mind that for a new system how to identify this problem and solve it.
With best regards
Sindrila Dutta Banik
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
- application/octet-stream attachment: DNA.pdb
Received on Sat May 07 2011 - 01:00:03 PDT
