That was the point, thanks
G.GUENEGOU
-----Original Message-----
From: Jason Swails [mailto:jason.swails.gmail.com]
Sent: mardi 17 mai 2011 16:26
To: AMBER Mailing List
Subject: Re: [AMBER] xleap as a molecular viewer
Black magic...
Turn off NUMLOCK.
No idea why this bug exists...
HTH,
Jason
On Tue, May 17, 2011 at 4:24 PM, Guenegou, Guillaume [ORDFR] <
GGUENEGO.its.jnj.com> wrote:
> I am sorry, there is another problem.
> I can rotate the molecule, zoom in or zoom out... but I cannot use the
> menu bar because when I click on "Unit" or "Edit" or "Display" and I
> release my click, the menu disappears... If I keep my finger clicking,
> the menu stay opened but I cannot select anything.
> Any help?
>
> Regards,
> G.GUENEGOU
>
>
>
> -----Original Message-----
> From: Guenegou, Guillaume [ORDFR] [mailto:GGUENEGO.ITS.JNJ.com]
> Sent: mardi 17 mai 2011 16:09
> To: AMBER Mailing List
> Subject: Re: [AMBER] xleap as a molecular viewer
>
> It helps a lot, now I see something!
> Thanks all for your answers
> G.GUENEGOU
>
>
> -----Original Message-----
> From: David A Case [mailto:case.biomaps.rutgers.edu]
> Sent: mardi 17 mai 2011 16:06
> To: AMBER Mailing List
> Subject: Re: [AMBER] xleap as a molecular viewer
>
> On Tue, May 17, 2011, Guenegou, Guillaume [ORDFR] wrote:
> >
> > I would like to use xleap as a molecular viewer (I know it is not
the
> > best idea on earth, but I have to!). I believe it is possible. I
work
> > with Amber11.
>
> The usual way to just view molecules is this:
>
> x = loadpdb <pdbfile>
> bondbydistance x
> edit x
>
> You don't need to load any libraries to do this, and it works with
> pretty
> arbitrary molecules.
>
> If you know you have just standard residues, you can load a library
> (ff10
> has the most up-to-date atom and residue names, consistent with PDB
> version
> 3). Then you can skip the "bondbydistance" command.
>
> Hope this helps...dac
>
>
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--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue May 17 2011 - 08:00:03 PDT
