Hi Andre,
As you may have seen from my post today on compiling AMBER 11 on top of AT
1.5, I could compile AmberTools 1.5 without problems using gcc 4.1.2, on
otherwise a pretty similar system (Linux 64-bit, Rocks 5.3).
Maybe an important difference is that I used a more recent flex compiler,
version 2.5.35.
Good luck,
Marc
On 22 May 2011 11:04, Andre <serobian.a.student.unsw.edu.au> wrote:
> Dear Glad,
>
> Thankyou I will try a more recent gcc version.
>
> Kind regards,
>
> Andre
>
>
> ----- Reply message -----
> From: "Vlad Cojocaru" <vlad.cojocaru.mpi-muenster.mpg.de>
> To: "AMBER Mailing List" <amber.ambermd.org>
> Subject: [AMBER] Ambertools 1.5 make install error
> Date: Sun, May 22, 2011 5:46 pm
>
>
> Andre,
>
> Do you have the option to use a newer GCC ? As I remember, it was a pain
> to compile with 4.1 ...
>
> 4.3 and 4.5 work very well
>
> Vlad
>
> On 05/22/2011 01:22 AM, Andre Serobian wrote:
> > Hi All,
> >
> > I have the same issue as http://archive.ambermd.org/201105/0149.htmlhowever there was no reply information from the user to solve the error.
> >
> > To recap, I am getting the following error after make install:
> >
> > In file included from sff.c:2278:
> > mm_options.l: In function ‘mmolex’:
> > mm_options.l:31: error: ‘hcp_h’ undeclared (first use in this function)
> > mm_options.l:31: error: (Each undeclared identifier is reported only once
> > mm_options.l:31: error: for each function it appears in.)
> > mm_options.l:139: error: ‘cutres’ undeclared (first use in this function)
> > make[1]: *** [sff.o] Error 1
> > make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/sff'
> > make: *** [serial] Error 2
> >
> > To give more information, I am using the following:
> > ./configure gnu
> > CentOS 5.6 64bit
> > flex version 2.5.4
> > gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
> >
> > Hope this helps solve the problem.
> >
> > Kind regards,
> >
> > Andre
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
> --
> Dr. Vlad Cojocaru
> Max Planck Institute for Molecular Biomedicine
> Department of Cellular and Developmental Biology
> Roentgenstrasse 20
> 48149 Muenster, Germany
> tel: +49-251-70365-324
> fax: +49-251-70365-399
> email: vlad.cojocaru[at]mpi-muenster.mpg.de
>
>
>
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Received on Tue May 24 2011 - 09:30:02 PDT
