Hello prijanka,
> I am interested to do generate cluster of all conformation generated in 1ns
> MD run. Please suggest whether i have to do manually on the basis of RMSD or
> there is any other method.
have a look into the AmberTools manual, the ptraj program is capable of
clustering. Also consult the respective reference from the literature.
Regards,
Anselm
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Received on Sat May 07 2011 - 11:30:02 PDT
