Re: [AMBER] ptraj clustering output

From: Lekpa Duukori <duukori.gmail.com>
Date: Wed, 11 May 2011 12:40:05 -0600

Thanks for the info.

Lekpa

On Wed, May 11, 2011 at 12:35 PM, Thomas Cheatham III <tec3.utah.edu> wrote:

>
> > Is there any sense to time at all in the output? What I mean is looking
> at
>
> Yes, that is a schematic as a function of time (x-axis)...
>
> > the output given below, does it mean that clusters 2 and 3 are the main
> > clusters AFTER a time when the structure is mostly close to cluster 1?
>
> Initially the trajectory is in cluster zero and moves to cluster 1, then
> primarily swaps between 2 and 3 (with brief visits back to 1)
>
> > #Cluster 0 6 ..
> > #Cluster 1 3X9992 .X95 . .
> > #Cluster 2 ....2 .365799652.59789898727886888767887666886
> > #Cluster 3 .7997 ..342..34794.21.1.1272113111232112333113
>
> time ----------->
>
>
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Received on Wed May 11 2011 - 12:00:06 PDT
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