Amber Archive Feb 2016: by subject

[AMBER] 3DRISM: erratic values for partial molar volume
- Tyler Luchko (Lists) (Wed Feb 03 2016 - 11:30:39 PST)
- Josh Berryman (Mon Feb 01 2016 - 05:16:01 PST)
[AMBER] [AMBER} nonpolar term for MMPBSA decomp showing up as 0
- Ray Luo, Ph.D. (Tue Feb 16 2016 - 14:04:45 PST)
- Kalenkiewicz, Andrew (NIH/NICHD) [F] (Tue Feb 16 2016 - 11:55:29 PST)
[AMBER] A question about cpptraj autoimage
- Daniel Roe (Thu Feb 18 2016 - 19:09:23 PST)
- 肖立 (Thu Feb 18 2016 - 17:02:17 PST)
[AMBER] accelerated MD - frequency of conformational change
- Daniel Roe (Fri Feb 05 2016 - 10:00:58 PST)
- Weinzierl, Robert O J (Fri Feb 05 2016 - 09:54:33 PST)
[AMBER] Amber 14 w/ CUDA - unclear "make test"-errors
- Falko Jähnert (Thu Feb 11 2016 - 13:40:10 PST)
- Jason Swails (Thu Feb 11 2016 - 08:04:12 PST)
- Ross Walker (Thu Feb 11 2016 - 07:29:26 PST)
- Ross Walker (Thu Feb 11 2016 - 07:31:54 PST)
- Falko Jähnert (Thu Feb 11 2016 - 05:37:32 PST)
- Jason Swails (Thu Feb 11 2016 - 05:03:19 PST)
- Falko Jähnert (Thu Feb 11 2016 - 04:36:50 PST)
[AMBER] AMBER Digest, Vol 1497, Issue 1
- Daniel Roe (Fri Feb 26 2016 - 07:26:28 PST)
- necmettin pirinccioglu (Fri Feb 26 2016 - 05:21:53 PST)
[AMBER] Amber/tutorial/advanced/tutorial16/
- zoran matovic (Tue Feb 02 2016 - 09:09:04 PST)
- zoran matovic (Tue Feb 02 2016 - 07:44:56 PST)
- JEAN MARC BILLOD (Tue Feb 02 2016 - 06:52:24 PST)
- zoran matovic (Tue Feb 02 2016 - 06:10:42 PST)
[AMBER] amber14 update
- Carlos Romero (Mon Feb 01 2016 - 16:50:14 PST)
[AMBER] aMD Secondary Structure
- Jason Swails (Sun Feb 07 2016 - 12:54:34 PST)
- Weinzierl, Robert O J (Sun Feb 07 2016 - 03:12:57 PST)
[AMBER] antechamber run for FAD
- Hannes Loeffler (Fri Feb 19 2016 - 02:59:02 PST)
- 홍종희 (Fri Feb 19 2016 - 02:12:20 PST)
[AMBER] average 3D structure with condition
- Michael Shokhen (Mon Feb 15 2016 - 14:43:38 PST)
- Daniel Roe (Mon Feb 15 2016 - 13:22:37 PST)
- Michael Shokhen (Mon Feb 15 2016 - 10:51:41 PST)
- Daniel Roe (Mon Feb 15 2016 - 08:59:35 PST)
- Carlos Simmerling (Mon Feb 15 2016 - 08:54:26 PST)
- Michael Shokhen (Mon Feb 15 2016 - 08:42:05 PST)
[AMBER] Bounds command with GIst
- Daniel Roe (Mon Feb 29 2016 - 07:32:29 PST)
- peter.schmidtke.discngine.servier.com (Mon Feb 29 2016 - 02:35:04 PST)
[AMBER] broken iodine bond problem in NEWPDB.PDB file.
- Bill Ross (Sat Feb 13 2016 - 11:44:11 PST)
- Saman Yousuf ali (Fri Feb 12 2016 - 23:04:20 PST)
- Saman Yousuf ali (Fri Feb 12 2016 - 22:30:41 PST)
[AMBER] calculate ligand RMSD for MD simulations; nofit or not?
- Marc Zhang (Mon Feb 22 2016 - 12:03:30 PST)
- David A Case (Mon Feb 22 2016 - 09:21:32 PST)
- Daniel Roe (Mon Feb 22 2016 - 09:15:47 PST)
- Marc Zhang (Mon Feb 22 2016 - 07:52:23 PST)
[AMBER] cationic-pi interactions
- Jason Swails (Fri Feb 19 2016 - 20:37:02 PST)
- Jose luis Borioni (Wed Feb 17 2016 - 19:56:48 PST)
[AMBER] charge derivation
- David Cerutti (Fri Feb 26 2016 - 07:41:10 PST)
- FyD (Fri Feb 26 2016 - 02:57:57 PST)
- Abelak, Kavin (Fri Feb 26 2016 - 02:52:37 PST)
- Abelak, Kavin (Fri Feb 26 2016 - 02:41:11 PST)
- FyD (Fri Feb 26 2016 - 01:10:17 PST)
- David Cerutti (Tue Feb 23 2016 - 08:04:56 PST)
- Abelak, Kavin (Tue Feb 23 2016 - 07:48:51 PST)
- David A Case (Fri Feb 19 2016 - 09:24:49 PST)
- Abelak, Kavin (Fri Feb 19 2016 - 07:48:18 PST)
[AMBER] charmmlipid2amber.py
- Batuhan Kav (Mon Feb 22 2016 - 04:44:57 PST)
[AMBER] citrulline parameters
- Marie Brut (Wed Feb 10 2016 - 12:06:11 PST)
- Karl Kirschner (Wed Feb 10 2016 - 06:36:11 PST)
- Marie Brut (Wed Feb 10 2016 - 06:13:46 PST)
[AMBER] Covariance Matrix in CPPTRAJ
- Daniel Roe (Sun Feb 21 2016 - 06:53:42 PST)
- Joel Lapin (Sat Feb 20 2016 - 19:57:12 PST)
- Joel Lapin (Sat Feb 20 2016 - 17:33:16 PST)
- Jason Swails (Sat Feb 20 2016 - 17:27:56 PST)
- Joel Lapin (Sat Feb 20 2016 - 16:29:57 PST)
- Daniel Roe (Sat Feb 20 2016 - 15:40:59 PST)
- Joel Lapin (Sat Feb 20 2016 - 15:10:46 PST)
[AMBER] CPPtraj & ParmEd - delete atoms
- Daniel Roe (Mon Feb 22 2016 - 10:53:16 PST)
- Balaji Selvam (Mon Feb 22 2016 - 10:41:20 PST)
[AMBER] cpptraj command for pi-stacking or hydrophobic interactions.
- Daniel Roe (Tue Feb 23 2016 - 08:05:51 PST)
- Saman Yousuf ali (Mon Feb 22 2016 - 20:34:58 PST)
[AMBER] cpptraj nativecontacts.
- Daniel Roe (Thu Feb 11 2016 - 15:48:24 PST)
- George Tzotzos (Thu Feb 11 2016 - 15:38:34 PST)
- Daniel Roe (Thu Feb 11 2016 - 15:10:21 PST)
- George Tzotzos (Thu Feb 11 2016 - 13:49:58 PST)
[AMBER] Dear all
- David A Case (Wed Feb 17 2016 - 06:58:56 PST)
- ankita mehta (Tue Feb 16 2016 - 21:21:25 PST)
- David A Case (Tue Feb 16 2016 - 04:54:27 PST)
- ankita mehta (Tue Feb 16 2016 - 02:43:57 PST)
- Gustavo Seabra (Fri Feb 12 2016 - 06:21:49 PST)
- Jason Swails (Fri Feb 12 2016 - 05:57:48 PST)
- Bill Ross (Fri Feb 12 2016 - 04:40:26 PST)
- ankita mehta (Fri Feb 12 2016 - 04:18:58 PST)
- Bill Ross (Fri Feb 12 2016 - 04:12:50 PST)
- ankita mehta (Fri Feb 12 2016 - 04:10:13 PST)
- Bill Ross (Fri Feb 12 2016 - 03:49:43 PST)
- ankita mehta (Fri Feb 12 2016 - 03:40:22 PST)
- Bill Ross (Fri Feb 12 2016 - 03:36:18 PST)
- ankita mehta (Fri Feb 12 2016 - 03:03:33 PST)
- David A Case (Tue Feb 02 2016 - 04:59:43 PST)
- Carlos Simmerling (Tue Feb 02 2016 - 04:43:48 PST)
- ankita mehta (Tue Feb 02 2016 - 04:29:56 PST)
- Jason Swails (Tue Feb 02 2016 - 04:20:11 PST)
- ankita mehta (Tue Feb 02 2016 - 03:18:52 PST)
[AMBER] Defining Units in nastruct
- Daniel Roe (Tue Feb 23 2016 - 07:49:49 PST)
- Robert Molt (Sun Feb 21 2016 - 15:45:16 PST)
[AMBER] delta G computation (MMPBSA.py)
- Карлов Дмитрий (Mon Feb 15 2016 - 04:29:11 PST)
[AMBER] Dihedral angles restraints from x-ray to NMR
- Vasantha Kumar (Wed Feb 03 2016 - 05:00:09 PST)
- David A Case (Wed Feb 03 2016 - 04:49:47 PST)
- Carlos Simmerling (Wed Feb 03 2016 - 04:32:51 PST)
- Vasantha Kumar (Wed Feb 03 2016 - 02:52:59 PST)
[AMBER] Dihedral parameters
- David Cerutti (Tue Feb 23 2016 - 08:42:22 PST)
- Jungho Yang (Tue Feb 23 2016 - 07:54:36 PST)
[AMBER] Downloading of Ambertools15
- Marc van der Kamp (Fri Feb 12 2016 - 02:16:07 PST)
- Mongam Riba (Fri Feb 12 2016 - 01:44:33 PST)
- Eiros Zamora, Juan (Fri Feb 12 2016 - 01:40:20 PST)
- Mongam Riba (Fri Feb 12 2016 - 01:23:22 PST)
[AMBER] draw vector along axis of an alpha helix
- Emilio Angelina (Sat Feb 27 2016 - 13:50:14 PST)
- Daniel Roe (Sat Feb 27 2016 - 12:57:38 PST)
- Joel Lapin (Sat Feb 27 2016 - 12:53:39 PST)
- Emilio Angelina (Sat Feb 27 2016 - 07:50:28 PST)
[AMBER] Duration parmchk
- Daniel Roe (Fri Feb 26 2016 - 07:21:30 PST)
- Stefano Sarao S215563 (Fri Feb 26 2016 - 04:41:54 PST)
[AMBER] Energy decomposition error
- Jason Swails (Fri Feb 19 2016 - 20:34:44 PST)
- Renato Freitas (Fri Feb 19 2016 - 13:17:20 PST)
[AMBER] EPtot, Angle, Bond, Dihed
- Thomas Cheatham (Mon Feb 29 2016 - 20:34:38 PST)
- Jason Swails (Mon Feb 29 2016 - 20:20:29 PST)
- David Cerutti (Mon Feb 29 2016 - 19:11:19 PST)
- Starovoytov, Oleg (Mon Feb 29 2016 - 18:02:26 PST)
[AMBER] Error atommask selectElemMask
- Ruth Helena Tichauer (Mon Feb 08 2016 - 05:44:48 PST)
- Jason Swails (Mon Feb 08 2016 - 05:42:07 PST)
- Ruth Helena Tichauer (Mon Feb 08 2016 - 05:36:38 PST)
[AMBER] error in minimization whole system
- David A Case (Sun Feb 07 2016 - 05:24:44 PST)
- Fatemeh Sadat Alavi (Sun Feb 07 2016 - 04:26:32 PST)
[AMBER] error in running rmsf command cpptraj
- Daniel Roe (Wed Feb 24 2016 - 07:19:57 PST)
- Saman Yousuf ali (Wed Feb 24 2016 - 06:01:16 PST)
[AMBER] error in sqm.out file
- David A Case (Fri Feb 26 2016 - 05:26:47 PST)
- Jesmita Dhar (Fri Feb 26 2016 - 00:15:31 PST)
[AMBER] Error: Bad > topology file.
- Jason Swails (Thu Feb 11 2016 - 12:48:51 PST)
- Batuhan Kav (Thu Feb 11 2016 - 12:24:54 PST)
- Daniel Roe (Thu Feb 11 2016 - 12:07:50 PST)
- Batuhan Kav (Thu Feb 11 2016 - 11:56:50 PST)
[AMBER] External library for leap
- Anna Cebrian Prats (Mon Feb 29 2016 - 01:39:28 PST)
- Daniel Roe (Fri Feb 26 2016 - 07:24:10 PST)
- Anna Cebrian Prats (Fri Feb 26 2016 - 05:14:28 PST)
[AMBER] free energy calculation of folding
- Josh Berryman (Wed Feb 03 2016 - 04:06:21 PST)
[AMBER] Fwd: cpinutil.py problem
- Jason Swails (Wed Feb 24 2016 - 09:31:40 PST)
- Elisa Pieri (Wed Feb 24 2016 - 07:14:25 PST)
- Marcelo Andrade Chagas (Wed Feb 24 2016 - 07:05:12 PST)
- Elisa Pieri (Wed Feb 24 2016 - 05:15:03 PST)
- Marcelo Andrade Chagas (Tue Feb 23 2016 - 19:26:41 PST)
- Jason Swails (Tue Feb 23 2016 - 18:45:46 PST)
- Elisa Pieri (Tue Feb 23 2016 - 07:39:38 PST)
[AMBER] Fwd: Error with disulphide bonds in tleap
- maryam azimzadehirani (Mon Feb 22 2016 - 22:11:52 PST)
- David A Case (Mon Feb 22 2016 - 04:50:17 PST)
- maryam azimzadehirani (Mon Feb 22 2016 - 01:10:54 PST)
[AMBER] Fwd: PC square fluctuations
- Rajeswari A. (Wed Feb 17 2016 - 03:01:15 PST)
- Daniel Roe (Tue Feb 16 2016 - 07:31:36 PST)
- Rajeswari A. (Mon Feb 15 2016 - 01:02:24 PST)
[AMBER] Fwd: Thermodynamic Integration
- David Cerutti (Wed Feb 24 2016 - 23:45:09 PST)
- Nhai (Wed Feb 24 2016 - 22:58:50 PST)
- Vertika Gautam (Wed Feb 24 2016 - 22:49:25 PST)
[AMBER] Gaussian error with MCPB ion modeling calculation
- Pengfei Li (Fri Feb 26 2016 - 08:56:15 PST)
- anu chandra (Fri Feb 26 2016 - 03:20:22 PST)
[AMBER] Getting and keeping ACPYPE updated
- David A Case (Tue Feb 16 2016 - 11:01:46 PST)
- Alan (Tue Feb 09 2016 - 03:33:03 PST)
[AMBER] Gist Installation in Amber12
- David A Case (Thu Feb 11 2016 - 04:17:03 PST)
- Mongam Riba (Wed Feb 10 2016 - 22:39:15 PST)
[AMBER] gpu_allreduce cudaDeviceSynchronize failed an illegal memory access was encountered
- Ross Walker (Tue Feb 16 2016 - 06:33:02 PST)
- Ryan Novosielski (Tue Feb 16 2016 - 06:20:49 PST)
- Sarah Anderson (Mon Feb 15 2016 - 09:04:13 PST)
- Ross Walker (Sat Feb 13 2016 - 10:13:19 PST)
- Scott Le Grand (Sat Feb 13 2016 - 08:41:04 PST)
- Daniel Roe (Sat Feb 13 2016 - 08:18:28 PST)
- Ross Walker (Fri Feb 12 2016 - 17:03:44 PST)
- Sarah Anderson (Fri Feb 12 2016 - 16:58:34 PST)
- Ross Walker (Fri Feb 12 2016 - 14:36:23 PST)
- Sarah Anderson (Fri Feb 12 2016 - 14:24:10 PST)
- Ross Walker (Fri Feb 12 2016 - 11:16:46 PST)
- Sarah Anderson (Fri Feb 12 2016 - 10:42:09 PST)
[AMBER] gzip -9 heat.mdcrd Error
- Batuhan Kav (Sat Feb 27 2016 - 06:54:50 PST)
- Mahdieh Hadi (Sat Feb 27 2016 - 06:27:03 PST)
[AMBER] Help to choose best-fit ion model
- Pengfei Li (Wed Feb 03 2016 - 08:37:06 PST)
- Pengfei Li (Wed Feb 03 2016 - 08:17:48 PST)
[AMBER] Hg parameterization
- Pengfei Li (Mon Feb 15 2016 - 12:48:33 PST)
[AMBER] How to analyze mutational free energy difference?
- Rajeswari A. (Mon Feb 29 2016 - 04:22:16 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 10:55:21 PST)
- Mijiddorj Batsaikhan (Sat Feb 27 2016 - 10:48:48 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 09:32:00 PST)
- Rajeswari A. (Sat Feb 27 2016 - 09:11:47 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 05:13:31 PST)
- Mahdieh Hadi (Sat Feb 27 2016 - 05:02:28 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 04:48:38 PST)
- Mahdieh Hadi (Sat Feb 27 2016 - 04:46:20 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 04:39:14 PST)
- Mijiddorj Batsaikhan (Fri Feb 26 2016 - 23:34:20 PST)
[AMBER] how to check protonation state
- Carlos Simmerling (Tue Feb 16 2016 - 13:25:01 PST)
- Ayesha Kanwal (Tue Feb 16 2016 - 12:46:13 PST)
[AMBER] How to separate a protein complex to its components
- Daniel Roe (Sun Feb 28 2016 - 05:57:07 PST)
- Arati Paudyal (Sun Feb 28 2016 - 04:56:21 PST)
- Marcelo Andrade Chagas (Sun Feb 28 2016 - 04:05:03 PST)
- Mahdieh Hadi (Sat Feb 27 2016 - 23:39:00 PST)
[AMBER] How to transfer amino acid sequence to Xleap.
- Bill Ross (Wed Feb 24 2016 - 11:28:57 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 10:59:32 PST)
- David A Case (Wed Feb 24 2016 - 10:54:06 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 07:36:20 PST)
- David A Case (Wed Feb 24 2016 - 04:56:35 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 03:32:15 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 03:23:10 PST)
- Bill Ross (Wed Feb 24 2016 - 03:13:24 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 03:07:12 PST)
- Bill Ross (Wed Feb 24 2016 - 03:00:41 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 02:54:20 PST)
[AMBER] Inquiry regarding amber installation
- Nhai (Mon Feb 29 2016 - 23:25:04 PST)
[AMBER] interpret results
- Carlos Romero (Thu Feb 11 2016 - 09:27:08 PST)
[AMBER] Is the Force Constant in the Parm**.dat file derived from a mass-weighted Hessian
- Nash, Anthony (Tue Feb 09 2016 - 05:34:52 PST)
- Jason Swails (Tue Feb 09 2016 - 04:39:37 PST)
- Thomas Collier (Tue Feb 09 2016 - 03:56:15 PST)
[AMBER] Is there a way to compare trajectories?
- Daniel Roe (Fri Feb 12 2016 - 02:48:00 PST)
- Karolina Markowska (Fri Feb 12 2016 - 02:41:05 PST)
- Marc van der Kamp (Fri Feb 12 2016 - 01:20:51 PST)
- Karolina Markowska (Fri Feb 12 2016 - 00:25:39 PST)
- Osman, Roman (Thu Feb 11 2016 - 07:40:50 PST)
- Daniel Roe (Thu Feb 11 2016 - 07:20:04 PST)
- Mohammed Khaled Tumbi (Thu Feb 11 2016 - 03:30:50 PST)
- Karolina Markowska (Thu Feb 11 2016 - 03:27:46 PST)
- Carlos Simmerling (Thu Feb 11 2016 - 03:15:39 PST)
- Karolina Markowska (Thu Feb 11 2016 - 01:44:52 PST)
- Dr. Anselm Horn (Thu Feb 11 2016 - 01:27:03 PST)
- Bill Ross (Thu Feb 11 2016 - 01:19:49 PST)
- Karolina Markowska (Thu Feb 11 2016 - 01:07:01 PST)
[AMBER] KeyError - MCPB.py
- Pengfei Li (Mon Feb 22 2016 - 17:20:06 PST)
- Pengfei Li (Mon Feb 22 2016 - 07:44:36 PST)
- Pengfei Li (Mon Feb 22 2016 - 07:26:57 PST)
- Taylor, Cooper (Mon Feb 22 2016 - 07:17:38 PST)
- Pengfei Li (Mon Feb 22 2016 - 07:10:16 PST)
- Taylor, Cooper (Sun Feb 21 2016 - 18:58:44 PST)
[AMBER] Li & Mertz ion parameters
- Bill Ross (Sat Feb 13 2016 - 13:34:35 PST)
- Pengfei Li (Sat Feb 13 2016 - 13:29:31 PST)
- Jason Swails (Fri Feb 12 2016 - 14:38:35 PST)
- Vlad Cojocaru (Fri Feb 12 2016 - 09:51:06 PST)
[AMBER] Ligand Molecules Being Rejected in SHIFTS 5.0.1
- David A Case (Tue Feb 23 2016 - 05:03:58 PST)
- Dan Morris (Mon Feb 22 2016 - 12:01:11 PST)
[AMBER] lmod & xmin in sander
- Jérémie KNOOPS [531802] (Tue Feb 23 2016 - 06:11:36 PST)
- David A Case (Mon Feb 22 2016 - 04:47:37 PST)
- Daniel Roe (Sun Feb 21 2016 - 06:59:58 PST)
- Jérémie KNOOPS [531802] (Sun Feb 21 2016 - 06:09:47 PST)
[AMBER] manually addition of parameters in frcmod file
- Mongam Riba (Tue Feb 23 2016 - 22:22:55 PST)
[AMBER] Maximum input value for the isothermal compressibility in AMBER
- David A Case (Thu Feb 25 2016 - 06:06:39 PST)
- BLEY Michael (Thu Feb 25 2016 - 05:25:55 PST)
[AMBER] membrane potential
- Dickson, Callum J (Fri Feb 19 2016 - 10:04:06 PST)
- Balaji Selvam (Thu Feb 18 2016 - 17:22:04 PST)
[AMBER] minimization error : segmentation fault
- Bill Ross (Wed Feb 10 2016 - 23:39:50 PST)
- Saman Yousuf ali (Wed Feb 10 2016 - 23:34:09 PST)
[AMBER] minimization error : segmentation fault (AMBER Digest, Vol 1483, Issue 1)
- Bill Ross (Thu Feb 11 2016 - 22:10:47 PST)
- Bill Ross (Thu Feb 11 2016 - 22:09:30 PST)
- Saman Yousuf ali (Thu Feb 11 2016 - 21:41:51 PST)
- Bill Ross (Thu Feb 11 2016 - 21:19:43 PST)
- Saman Yousuf ali (Thu Feb 11 2016 - 21:14:54 PST)
[AMBER] Minimization error using Sander
- Anna Cebrian Prats (Thu Feb 25 2016 - 06:24:54 PST)
- David A Case (Thu Feb 25 2016 - 05:16:49 PST)
- Bill Ross (Thu Feb 25 2016 - 03:27:55 PST)
- Anna Cebrian Prats (Thu Feb 25 2016 - 02:17:15 PST)
[AMBER] MMGBSA error
- Indrajit Deb (Thu Feb 25 2016 - 17:06:42 PST)
- Jason Swails (Thu Feb 25 2016 - 17:01:38 PST)
- Indrajit Deb (Thu Feb 25 2016 - 16:27:29 PST)
- Indrajit Deb (Thu Feb 25 2016 - 09:24:38 PST)
[AMBER] MMPB (GB) SA cpptraj failed with prmtop
- Jason Swails (Thu Feb 11 2016 - 04:50:09 PST)
- Arati Paudyal (Thu Feb 11 2016 - 04:47:00 PST)
- Jason Swails (Wed Feb 10 2016 - 18:15:44 PST)
- Arati Paudyal (Wed Feb 10 2016 - 15:42:47 PST)
- Jason Swails (Wed Feb 10 2016 - 09:00:58 PST)
- Daniel Roe (Wed Feb 10 2016 - 08:00:40 PST)
- Arati Paudyal (Wed Feb 10 2016 - 07:53:40 PST)
- Daniel Roe (Wed Feb 10 2016 - 07:37:15 PST)
- Arati Paudyal (Wed Feb 10 2016 - 07:26:28 PST)
- Jason Swails (Wed Feb 10 2016 - 07:12:59 PST)
- Arati Paudyal (Wed Feb 10 2016 - 06:39:53 PST)
[AMBER] MMPBSA ImportError
- zoran matovic (Sun Feb 07 2016 - 10:40:44 PST)
- Ross Walker (Sun Feb 07 2016 - 09:36:08 PST)
- Jason Swails (Sat Feb 06 2016 - 18:53:24 PST)
- zoran matovic (Sat Feb 06 2016 - 10:10:28 PST)
- Ross Walker (Sat Feb 06 2016 - 09:31:12 PST)
- Ross Walker (Sat Feb 06 2016 - 09:29:57 PST)
- Jason Swails (Fri Feb 05 2016 - 18:49:18 PST)
- Jason Swails (Fri Feb 05 2016 - 18:45:13 PST)
- Joseph Baker (Fri Feb 05 2016 - 17:57:00 PST)
- Ross Walker (Fri Feb 05 2016 - 16:46:19 PST)
- Jason Swails (Fri Feb 05 2016 - 05:13:47 PST)
- Joseph Baker (Fri Feb 05 2016 - 03:51:13 PST)
- Jason Swails (Thu Feb 04 2016 - 19:22:55 PST)
- Joseph Baker (Thu Feb 04 2016 - 15:06:02 PST)
- David A Case (Thu Feb 04 2016 - 14:50:28 PST)
- Joseph Baker (Thu Feb 04 2016 - 13:54:11 PST)
- David A Case (Wed Feb 03 2016 - 12:16:57 PST)
- Jason Swails (Wed Feb 03 2016 - 05:41:21 PST)
- Josh Berryman (Wed Feb 03 2016 - 05:33:45 PST)
- Jason Swails (Wed Feb 03 2016 - 04:49:51 PST)
- Joseph Baker (Tue Feb 02 2016 - 21:02:11 PST)
- Joseph Baker (Tue Feb 02 2016 - 18:25:51 PST)
[AMBER] MMPBSA.py.MPI won't recognise mpy4pi
- Jason Swails (Sun Feb 14 2016 - 16:13:20 PST)
- Wesley Michael Botello-Smith (Sun Feb 14 2016 - 14:58:37 PST)
- Jason Swails (Fri Feb 12 2016 - 17:03:12 PST)
- Wesley Michael Botello-Smith (Fri Feb 12 2016 - 16:45:14 PST)
[AMBER] more extra points needed
- Jason Swails (Mon Feb 29 2016 - 20:34:44 PST)
- Ivanov, Maxim (Mon Feb 29 2016 - 09:15:17 PST)
[AMBER] Need Amber entropy calculated values
- Jason Swails (Mon Feb 29 2016 - 20:25:25 PST)
- Ayesha Kanwal (Mon Feb 29 2016 - 06:48:41 PST)
[AMBER] No exe file in Amberhome
- Jason Swails (Wed Feb 24 2016 - 09:24:54 PST)
- Gustavo Seabra (Wed Feb 24 2016 - 03:35:06 PST)
- Marcelo Andrade Chagas (Wed Feb 24 2016 - 03:33:51 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 02:27:26 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 02:13:18 PST)
- Daniel Roe (Tue Feb 23 2016 - 09:05:04 PST)
- David A Case (Tue Feb 23 2016 - 09:03:17 PST)
- Marcelo Andrade Chagas (Tue Feb 23 2016 - 08:44:08 PST)
- Daniel Roe (Tue Feb 23 2016 - 08:07:06 PST)
- Mahdieh Hadi (Tue Feb 23 2016 - 05:25:35 PST)
- David A Case (Tue Feb 23 2016 - 04:52:50 PST)
- Mahdieh Hadi (Tue Feb 23 2016 - 01:18:27 PST)
- Hai Nguyen (Mon Feb 22 2016 - 23:54:23 PST)
- Mahdieh Hadi (Mon Feb 22 2016 - 23:51:04 PST)
- Marcelo Andrade Chagas (Mon Feb 22 2016 - 15:22:59 PST)
- David A Case (Mon Feb 22 2016 - 13:03:33 PST)
- Mahdieh Hadi (Mon Feb 22 2016 - 12:37:52 PST)
- David A Case (Mon Feb 22 2016 - 11:53:02 PST)
- Ebert Maximilian (Mon Feb 22 2016 - 11:11:26 PST)
- Mahdieh Hadi (Mon Feb 22 2016 - 10:53:15 PST)
[AMBER] Normalizing histogram with CPPTRAJ
- Daniel Roe (Wed Feb 10 2016 - 09:25:40 PST)
- anu chandra (Wed Feb 10 2016 - 09:05:25 PST)
[AMBER] Nucleic acid builder
- nhai.wn (Tue Feb 23 2016 - 18:15:08 PST)
- yhzahsc (Tue Feb 23 2016 - 18:04:39 PST)
[AMBER] Paradynamics with Amber
- Ulf Ryde (Fri Feb 26 2016 - 08:07:06 PST)
- David A Case (Mon Feb 22 2016 - 12:06:26 PST)
- David A Case (Mon Feb 22 2016 - 08:51:20 PST)
- Adrian Roitberg (Mon Feb 22 2016 - 08:24:01 PST)
- Gerald Monard (Mon Feb 22 2016 - 07:54:27 PST)
- David A Case (Mon Feb 22 2016 - 07:30:58 PST)
- Gerald Monard (Mon Feb 22 2016 - 07:28:26 PST)
- Ulf Ryde (Mon Feb 22 2016 - 06:56:43 PST)
[AMBER] parameter file for graphene oxide
- FyD (Fri Feb 26 2016 - 01:28:00 PST)
- Karl Kirschner (Thu Feb 25 2016 - 01:54:23 PST)
- Jesmita Dhar (Thu Feb 25 2016 - 01:36:57 PST)
- Jesmita Dhar (Tue Feb 23 2016 - 03:34:23 PST)
[AMBER] parameter file for isoaspartate acid
- Jesmita Dhar (Tue Feb 23 2016 - 03:36:02 PST)
- David A Case (Mon Feb 22 2016 - 04:57:11 PST)
- Jesmita Dhar (Mon Feb 22 2016 - 03:58:13 PST)
- Jesmita Dhar (Mon Feb 22 2016 - 03:15:50 PST)
- Bill Ross (Mon Feb 22 2016 - 02:40:32 PST)
- Jesmita Dhar (Mon Feb 22 2016 - 02:15:23 PST)
- Bill Ross (Mon Feb 22 2016 - 01:18:57 PST)
- Jesmita Dhar (Mon Feb 22 2016 - 01:15:20 PST)
[AMBER] Parameter for Aspartic Acid-Lysine Cyclic peptide
- Dr. Anselm Horn (Wed Feb 10 2016 - 06:31:13 PST)
- Carlos Simmerling (Wed Feb 10 2016 - 04:52:14 PST)
- Mohammed Khaled Tumbi (Wed Feb 10 2016 - 04:12:04 PST)
- Mohammed Khaled Tumbi (Tue Feb 09 2016 - 07:05:26 PST)
- Carlos Simmerling (Tue Feb 09 2016 - 06:55:11 PST)
- Mohammed Khaled Tumbi (Tue Feb 09 2016 - 06:44:18 PST)
[AMBER] Paramfit, negative bond parameters
- David Poole (Fri Feb 12 2016 - 12:25:22 PST)
- Robin Betz (Thu Feb 11 2016 - 16:37:48 PST)
- David Poole (Thu Feb 11 2016 - 15:53:41 PST)
[AMBER] parmed/chamber problem recognizing atom types
- Jason Swails (Tue Feb 16 2016 - 18:35:45 PST)
- Amy Rice (Tue Feb 16 2016 - 10:02:42 PST)
[AMBER] Pdb file to Mol2
- Thomas Cheatham (Mon Feb 29 2016 - 09:59:07 PST)
- Daniel Roe (Mon Feb 29 2016 - 07:34:20 PST)
- Mahdieh Hadi (Mon Feb 29 2016 - 07:19:44 PST)
- Mahdieh Hadi (Mon Feb 29 2016 - 06:31:44 PST)
- Carlos Simmerling (Mon Feb 29 2016 - 05:30:32 PST)
- Mahdieh Hadi (Mon Feb 29 2016 - 05:13:48 PST)
- Daniel Roe (Fri Feb 26 2016 - 08:08:00 PST)
- Mahdieh Hadi (Fri Feb 26 2016 - 07:56:09 PST)
- Daniel Roe (Fri Feb 26 2016 - 07:47:03 PST)
- Mahdieh Hadi (Fri Feb 26 2016 - 07:30:34 PST)
- Daniel Roe (Fri Feb 26 2016 - 07:20:25 PST)
- Marcelo Andrade Chagas (Fri Feb 26 2016 - 04:24:22 PST)
- Marcelo Andrade Chagas (Fri Feb 26 2016 - 04:18:35 PST)
- Mahdieh Hadi (Fri Feb 26 2016 - 04:03:47 PST)
[AMBER] PDB to distance in AMBER
- Vasantha Kumar (Mon Feb 15 2016 - 02:30:34 PST)
- Hai Nguyen (Wed Feb 10 2016 - 07:51:54 PST)
- Vasantha Kumar (Wed Feb 10 2016 - 07:39:57 PST)
[AMBER] Ph.D. position, Nancy, France
- Gerald Monard (Thu Feb 25 2016 - 00:39:31 PST)
[AMBER] Post-doctoral position in Computational Physics
- Andrea Spitaleri (Tue Feb 23 2016 - 02:08:26 PST)
[AMBER] Preparing needed input files for TI
- mahdie hadi (Mon Feb 29 2016 - 07:11:31 PST)
- Hannes Loeffler (Mon Feb 29 2016 - 04:00:53 PST)
- Mahdieh Hadi (Mon Feb 29 2016 - 03:26:02 PST)
[AMBER] problem running MD for diphosphoric acid anion
- David A Case (Mon Feb 29 2016 - 04:43:19 PST)
- necmettin pirinccioglu (Sun Feb 28 2016 - 23:56:44 PST)
- Ross Walker (Thu Feb 25 2016 - 01:00:15 PST)
- necmettin pirinccioglu (Thu Feb 25 2016 - 00:48:45 PST)
[AMBER] problem with energy minimization (sander)
- Jason Swails (Wed Feb 10 2016 - 05:49:07 PST)
- Maryam Hamzehee (Wed Feb 10 2016 - 05:13:27 PST)
- Jason Swails (Wed Feb 10 2016 - 04:44:28 PST)
- Maryam Hamzehee (Wed Feb 10 2016 - 04:26:06 PST)
[AMBER] Problem with HIS/HIE residue and ff14SB force field
- David A Case (Fri Feb 26 2016 - 05:31:36 PST)
- Hannes Loeffler (Fri Feb 26 2016 - 02:53:35 PST)
- Casalini Tommaso (Fri Feb 26 2016 - 02:45:10 PST)
- Casalini Tommaso (Fri Feb 26 2016 - 02:38:59 PST)
- Hannes Loeffler (Fri Feb 26 2016 - 02:34:02 PST)
- Casalini Tommaso (Fri Feb 26 2016 - 02:20:02 PST)
[AMBER] Problem with saving parameters for a complex having Heme group
- Emilio Lence (Mon Feb 08 2016 - 08:46:43 PST)
[AMBER] Problems with when using DFTB halorg .skf files in sqm
- David A Case (Thu Feb 04 2016 - 11:01:32 PST)
- Marc van der Kamp (Thu Feb 04 2016 - 06:08:00 PST)
- Gustavo Seabra (Thu Feb 04 2016 - 05:28:07 PST)
- Marc van der Kamp (Thu Feb 04 2016 - 04:37:42 PST)
[AMBER] Quasi-harmonic Calculations
- Daniel Roe (Thu Feb 11 2016 - 09:20:48 PST)
- Jason Swails (Thu Feb 11 2016 - 08:42:57 PST)
- Aronica, Pietro (Thu Feb 11 2016 - 07:34:56 PST)
[AMBER] Query regarding extracting protons from coordinate/trajectory file
- David A Case (Wed Feb 24 2016 - 04:53:50 PST)
- Madhura De (Wed Feb 24 2016 - 00:42:16 PST)
[AMBER] Query: extracting protons from trajectory/coordinate file
- Daniel Roe (Wed Feb 24 2016 - 07:18:27 PST)
- Madhura De (Wed Feb 24 2016 - 03:52:00 PST)
[AMBER] Question about AmberTools14/15 installation
- A kS (Tue Feb 09 2016 - 21:33:12 PST)
- Jason Swails (Tue Feb 09 2016 - 11:18:41 PST)
- A kS (Tue Feb 09 2016 - 11:10:03 PST)
- Novosielski, Ryan (Mon Feb 08 2016 - 07:41:10 PST)
- Jason Swails (Mon Feb 08 2016 - 05:15:05 PST)
- A kS (Mon Feb 08 2016 - 00:15:28 PST)
[AMBER] Question about mask command
- Daniel Roe (Wed Feb 03 2016 - 08:17:53 PST)
- Daniel Roe (Tue Feb 02 2016 - 07:27:52 PST)
- A kS (Tue Feb 02 2016 - 01:28:24 PST)
[AMBER] Question regarding protein-Dna binding free energy
- Vlad Cojocaru (Thu Feb 25 2016 - 07:15:32 PST)
- Mahdieh Hadi (Thu Feb 25 2016 - 06:56:48 PST)
- Vlad Cojocaru (Thu Feb 25 2016 - 06:52:15 PST)
- Mahdieh Hadi (Thu Feb 25 2016 - 06:25:54 PST)
[AMBER] R: Fwd: cpinutil.py problem
- Jason Swails (Wed Feb 24 2016 - 18:28:37 PST)
- Elisa Pieri (Wed Feb 24 2016 - 10:18:12 PST)
[AMBER] R: R: Fwd: cpinutil.py problem
- Elisa Pieri (Fri Feb 26 2016 - 01:59:02 PST)
- Jason Swails (Thu Feb 25 2016 - 15:56:35 PST)
- Elisa Pieri (Wed Feb 24 2016 - 22:33:45 PST)
[AMBER] reading Amber trajectory files with chamber topology file
- Daniel Roe (Mon Feb 29 2016 - 08:17:35 PST)
- Daniel Roe (Mon Feb 29 2016 - 07:42:01 PST)
[AMBER] Reg: problem in generating prmtop and crd files by using ff12SB of magnesium ions
- Yogeeshwar Ajjugal (Tue Feb 16 2016 - 21:10:53 PST)
- David A Case (Tue Feb 16 2016 - 10:22:57 PST)
- Yogeeshwar Ajjugal (Tue Feb 16 2016 - 04:35:32 PST)
[AMBER] Regarding caution message in the out file with pmemd.cuda.MPI
- anu chandra (Mon Feb 29 2016 - 06:33:09 PST)
- Ross Walker (Fri Feb 26 2016 - 14:36:27 PST)
- anu chandra (Fri Feb 26 2016 - 03:28:45 PST)
[AMBER] Regarding minimization in AMBER
- Ross Walker (Fri Feb 12 2016 - 22:47:31 PST)
- neha chaudhary (Fri Feb 12 2016 - 22:26:18 PST)
[AMBER] Regarding MMGBSA calculation
- Daniel Roe (Thu Feb 11 2016 - 07:22:49 PST)
- David A Case (Thu Feb 11 2016 - 04:45:22 PST)
- neha chaudhary (Thu Feb 11 2016 - 02:45:44 PST)
- David A Case (Sat Feb 06 2016 - 05:24:34 PST)
- neha chaudhary (Fri Feb 05 2016 - 23:20:28 PST)
- David A Case (Fri Feb 05 2016 - 05:05:07 PST)
- Jason Swails (Fri Feb 05 2016 - 04:58:33 PST)
- neha chaudhary (Thu Feb 04 2016 - 23:48:24 PST)
[AMBER] Regarding trajectory analysis using CPPTRAJ
- Daniel Roe (Fri Feb 26 2016 - 07:18:20 PST)
- Bill Ross (Fri Feb 26 2016 - 02:44:32 PST)
- Sivanandam M (Fri Feb 26 2016 - 02:38:17 PST)
[AMBER] Regaridng FIle preparation in AMBERTOOLS14
- David A Case (Tue Feb 02 2016 - 04:57:21 PST)
- A kS (Tue Feb 02 2016 - 01:32:11 PST)
- Sivanandam M (Tue Feb 02 2016 - 01:24:26 PST)
[AMBER] Relabeling Atoms after a Run Trajectory
- Gustavo Seabra (Fri Feb 19 2016 - 09:57:22 PST)
- Robert Molt (Fri Feb 19 2016 - 07:03:20 PST)
- Thomas Cheatham (Fri Feb 19 2016 - 07:01:02 PST)
- Robert Molt (Fri Feb 19 2016 - 06:54:59 PST)
[AMBER] REMD tutorial
- Daniel Roe (Thu Feb 04 2016 - 10:51:28 PST)
- abdennour braka (Thu Feb 04 2016 - 09:51:23 PST)
[AMBER] Replacement for xmgrace
- Jean-Patrick Francoia (Mon Feb 01 2016 - 12:46:13 PST)
- Jason Swails (Mon Feb 01 2016 - 11:53:43 PST)
- Hai Nguyen (Mon Feb 01 2016 - 11:32:26 PST)
- Jean-Patrick Francoia (Mon Feb 01 2016 - 11:27:13 PST)
- Hai Nguyen (Mon Feb 01 2016 - 09:09:55 PST)
- Jason Swails (Mon Feb 01 2016 - 08:27:51 PST)
- Jean-Patrick Francoia (Mon Feb 01 2016 - 06:52:42 PST)
- Jason Swails (Mon Feb 01 2016 - 06:36:39 PST)
- Jean-Patrick Francoia (Mon Feb 01 2016 - 06:32:41 PST)
- Jason Swails (Mon Feb 01 2016 - 06:05:48 PST)
- Jean-Patrick Francoia (Mon Feb 01 2016 - 05:57:41 PST)
- David A Case (Mon Feb 01 2016 - 05:08:48 PST)
- Lorenzo Gontrani (Mon Feb 01 2016 - 03:26:39 PST)
- Bill Ross (Mon Feb 01 2016 - 02:58:55 PST)
- Vasantha Kumar (Mon Feb 01 2016 - 02:51:52 PST)
- Jean-Patrick Francoia (Mon Feb 01 2016 - 02:17:42 PST)
- Hannes Loeffler (Mon Feb 01 2016 - 02:13:11 PST)
- Andrea Spitaleri (Mon Feb 01 2016 - 01:52:01 PST)
- Jean-Patrick Francoia (Mon Feb 01 2016 - 01:48:31 PST)
[AMBER] Restarting a heating simulation
- Carlos Simmerling (Thu Feb 11 2016 - 05:14:29 PST)
- Elisa Pieri (Thu Feb 11 2016 - 05:05:21 PST)
- Jason Swails (Thu Feb 11 2016 - 05:00:24 PST)
- David A Case (Thu Feb 11 2016 - 04:50:39 PST)
- Elisa Pieri (Thu Feb 11 2016 - 02:43:50 PST)
[AMBER] Segmentation fault when converting charmm to amber toppar using chamber
- Gary Zhang (Tue Feb 02 2016 - 06:53:12 PST)
- Jason Swails (Mon Feb 01 2016 - 15:08:07 PST)
- Gary Zhang (Mon Feb 01 2016 - 13:09:27 PST)
[AMBER] Size of solvent box
- Carlos Simmerling (Wed Feb 03 2016 - 10:38:24 PST)
- Jason Swails (Wed Feb 03 2016 - 10:31:23 PST)
- Krantzman, Kristin D (Wed Feb 03 2016 - 09:27:20 PST)
[AMBER] Size of solvent box, RDF
- Jason Swails (Fri Feb 05 2016 - 18:52:18 PST)
- Krantzman, Kristin D (Fri Feb 05 2016 - 14:31:26 PST)
- Carlos Simmerling (Fri Feb 05 2016 - 10:42:01 PST)
- Jason Swails (Fri Feb 05 2016 - 10:36:16 PST)
- Krantzman, Kristin D (Fri Feb 05 2016 - 09:44:27 PST)
- Carlos Simmerling (Fri Feb 05 2016 - 04:10:05 PST)
- Krantzman, Kristin D (Thu Feb 04 2016 - 10:42:50 PST)
[AMBER] SP3 Nitrogen planarity issue with ff14SB
- Carlos Simmerling (Sun Feb 28 2016 - 06:20:38 PST)
- Prayagraj Fandilolu (Sat Feb 27 2016 - 23:53:20 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 05:17:51 PST)
- Prayagraj Fandilolu (Sat Feb 27 2016 - 05:00:30 PST)
- Carlos Simmerling (Sat Feb 27 2016 - 04:34:40 PST)
- Prayagraj Fandilolu (Sat Feb 27 2016 - 01:40:09 PST)
- Lorenzo Gontrani (Sat Feb 27 2016 - 01:14:11 PST)
- Prayagraj Fandilolu (Sat Feb 27 2016 - 01:07:48 PST)
- Carlos Simmerling (Tue Feb 02 2016 - 04:26:46 PST)
- Jason Swails (Tue Feb 02 2016 - 04:13:22 PST)
- Prayagraj Fandilolu (Mon Feb 01 2016 - 20:15:17 PST)
[AMBER] standard deviation of rmsd values
- Daniel Roe (Wed Feb 03 2016 - 05:50:43 PST)
- Jason Swails (Wed Feb 03 2016 - 05:49:31 PST)
- Atila Petrosian (Tue Feb 02 2016 - 23:39:04 PST)
[AMBER] Steered MD of membrane proteins
- Ofir Tal (Mon Feb 08 2016 - 01:14:04 PST)
[AMBER] summary.ETOT analysis
- Jason Swails (Sun Feb 14 2016 - 04:14:39 PST)
- Michael Shokhen (Sun Feb 14 2016 - 01:47:03 PST)
[AMBER] summary.ETOT analysis and MMPBSA.py
- George Tzotzos (Sun Feb 14 2016 - 07:09:02 PST)
- Jason Swails (Sun Feb 14 2016 - 06:15:24 PST)
- Michael Shokhen (Sun Feb 14 2016 - 05:10:58 PST)
[AMBER] Technical problem running pH-REMD
- Daniel Roe (Wed Feb 17 2016 - 07:57:09 PST)
- Elisa Pieri (Wed Feb 17 2016 - 07:35:16 PST)
- Daniel Roe (Wed Feb 17 2016 - 07:25:10 PST)
- Daniel Roe (Wed Feb 17 2016 - 07:23:50 PST)
- Elisa Pieri (Wed Feb 17 2016 - 06:53:37 PST)
- Adrian Roitberg (Wed Feb 17 2016 - 06:34:26 PST)
- Elisa Pieri (Wed Feb 17 2016 - 06:22:06 PST)
[AMBER] the angle between two axis
- maryam azimzadehirani (Fri Feb 26 2016 - 00:26:48 PST)
- mmaestre (Fri Feb 26 2016 - 00:01:29 PST)
- Hai Nguyen (Thu Feb 25 2016 - 23:27:10 PST)
- maryam azimzadehirani (Thu Feb 25 2016 - 23:20:57 PST)
[AMBER] Thermodynamic Integration
- Vertika Gautam (Wed Feb 24 2016 - 22:44:05 PST)
[AMBER] tMD with ligand
- Carlos Simmerling (Tue Feb 23 2016 - 06:14:45 PST)
- Jean-Marc Billod (Tue Feb 23 2016 - 05:32:49 PST)
- Carlos Simmerling (Tue Feb 23 2016 - 04:19:03 PST)
- Jean-Marc Billod (Tue Feb 23 2016 - 03:26:46 PST)
- Carlos Simmerling (Tue Feb 23 2016 - 03:14:36 PST)
- Jean-Marc Billod (Tue Feb 23 2016 - 01:45:45 PST)
[AMBER] Typing {} in Xleap
- Bill Ross (Wed Feb 24 2016 - 02:50:00 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 02:32:47 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 02:18:16 PST)
- Bill Ross (Wed Feb 24 2016 - 02:10:33 PST)
- Mahdieh Hadi (Wed Feb 24 2016 - 01:48:28 PST)
[AMBER] unable to generate Mercury parameter file
- David A Case (Wed Feb 17 2016 - 06:53:31 PST)
- Bill Ross (Tue Feb 16 2016 - 22:14:09 PST)
- Sehrish Naz Aijaz (Tue Feb 16 2016 - 21:06:51 PST)
[AMBER] Unable to run QM/MM with RNA and sodium ion
- David A Case (Thu Feb 11 2016 - 14:33:38 PST)
- kaushik chakraborty (Thu Feb 11 2016 - 08:57:39 PST)
[AMBER] Value of ntrx=7
- Jason Swails (Mon Feb 01 2016 - 12:58:35 PST)
- Krantzman, Kristin D (Mon Feb 01 2016 - 12:02:09 PST)
- Jason Swails (Mon Feb 01 2016 - 11:55:43 PST)
- Krantzman, Kristin D (Mon Feb 01 2016 - 11:50:21 PST)
[AMBER] velocity auto correlation function
- Daniel Roe (Tue Feb 23 2016 - 07:57:52 PST)
- Vertika Gautam (Sun Feb 21 2016 - 21:27:16 PST)
[AMBER] want script for plotting graph on entropy
- David A Case (Mon Feb 22 2016 - 05:00:38 PST)
- Ayesha Kanwal (Mon Feb 22 2016 - 03:40:15 PST)
[AMBER] want to ask you about PCA plotting
- Ayesha Kanwal (Tue Feb 16 2016 - 12:42:08 PST)
- Daniel Roe (Tue Feb 16 2016 - 07:26:47 PST)
- Ayesha Kanwal (Tue Feb 16 2016 - 01:58:58 PST)
[AMBER] waters inside cavity
- Niel Henriksen (Fri Feb 26 2016 - 09:59:11 PST)
- Elisa Pieri (Fri Feb 26 2016 - 07:00:54 PST)
[AMBER] Wrong or no center in RdPar
- Fatemeh Sadat Alavi (Sat Feb 06 2016 - 01:05:38 PST)
[AMBER] Wrong or no center in RdPar.
- Ruixing Wang (Mon Feb 01 2016 - 17:54:51 PST)
- Jason Swails (Mon Feb 01 2016 - 06:08:54 PST)
- Fatemeh Sadat Alavi (Sun Jan 31 2016 - 22:25:38 PST)
[AMBER] Z-constraint PMF method
- zoran matovic (Mon Feb 08 2016 - 07:01:47 PST)
- Adrian Roitberg (Mon Feb 08 2016 - 06:38:30 PST)
- Dickson, Callum J (Mon Feb 08 2016 - 06:36:22 PST)
- zoran matovic (Sun Feb 07 2016 - 13:07:50 PST)
- Jason Swails (Sun Feb 07 2016 - 12:50:03 PST)
- zoran matovic (Sun Feb 07 2016 - 10:28:20 PST)
- zoran matovic (Sat Feb 06 2016 - 05:32:26 PST)
[AMBER] Zero pressure with pmemd.cuda
- Jason Swails (Fri Feb 05 2016 - 10:27:14 PST)
- Ross Walker (Fri Feb 05 2016 - 09:03:06 PST)
- Batuhan Kav (Fri Feb 05 2016 - 08:10:57 PST)
Hg parameterization
- nida baig (Mon Feb 15 2016 - 08:43:35 PST)
Nucleic acid builder
- yhzahsc (Tue Feb 23 2016 - 20:08:49 PST)
- Hai Nguyen (Tue Feb 23 2016 - 19:46:52 PST)
- yhzahsc (Tue Feb 23 2016 - 19:41:27 PST)
- yhzahsc (Tue Feb 23 2016 - 19:39:59 PST)
- Hai Nguyen (Tue Feb 23 2016 - 19:00:18 PST)
- Robert Molt (Tue Feb 23 2016 - 18:42:27 PST)
- yhzahsc (Tue Feb 23 2016 - 18:40:45 PST)

Amber Archive Feb 2016 by subject