[AMBER] Regarding trajectory analysis using CPPTRAJ

From: Sivanandam M <sivanandamphy.gmail.com>
Date: Fri, 26 Feb 2016 05:38:17 -0500

Dear AMBER users,
                              I analysed one MD trajectory file using
CPPTRAJ module. That job gives the following error. Please advice me to
rectify this problem.



CPPTRAJ: Trajectory Analysis. V14.25
    ___ ___ ___ ___
     | \/ | \/ | \/ |
    _|_/\_|_/\_|_/\_|_
    Reading 'c1-lig.prmtop' as Amber Topology
INPUT: Reading Input from file strip3.in
  [trajin prod_dry.mdcrd]
    Reading 'prod_dry.mdcrd' as Amber Trajectory
Error: In prod_dry.mdcrd, expect only 3 or 6 box coords, got 5
Error: Box line=[ 54.051 32.808 49.526 54.909 33.095
]
Error: Could not set up prod_dry.mdcrd for reading.
Error: Could not set up input trajectory 'prod_dry.mdcrd'.
    1 errors encountered reading input.
TIME: Total execution time: 0.4008 seconds.

--------------------------------------------------------
M.SIVANANDAM
Research Scholar
Department of Physics
School of Physical Sciences
Periyar University
Salem-636 011
Mobile- 9965582730, 9042066076
--------------------------------------------------------
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Received on Fri Feb 26 2016 - 03:00:04 PST
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