[AMBER] A question about cpptraj autoimage

From: 肖立 <xiaoli19871216.gmail.com>
Date: Thu, 18 Feb 2016 17:02:17 -0800

Hi,all:
    I met a problem in cpptraj autoiamge:

The commend *.in file is:
trajin 06_Prod_1ORQ_HERG_1.nc
trajin 06_Prod_1ORQ_HERG_2.nc
trajin 06_Prod_1ORQ_HERG_3.nc
trajin 06_Prod_1ORQ_HERG_4.nc
autoimage
trajout 06_Prod_1ORQ_HERG_vmd.mdcrd

It turns out at some of the frames, the protein chains are still sit in
different cells. Does any one know which command we should use in order to
make the protein chains always sit in the same cell?

Many thanks!

Li Xiao
University of California, Irvine
Email: xiaoli19871216.gmail.com
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Feb 18 2016 - 17:30:03 PST
Custom Search