[AMBER] Query: extracting protons from trajectory/coordinate file

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From: Madhura De <madhurade.yahoo.co.in>
Date: Wed, 24 Feb 2016 11:52:00 +0000 (UTC)

Hello!
I use Amber14 suite. I am about to do an NMR refinement of a DNA duplex and will be using IRMA (http://www.nmr.chem.uu.nl/Software/irma.php). The input file for IRMA requires only protons to be extracted from all-atom coordinate or trajectory file.Can you tell me the command by which I can extract only the protons from mdcrd or pdb file?
MadhuraBose InstituteIndia
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Received on Wed Feb 24 2016 - 04:00:07 PST