On Mon, Feb 22, 2016, Mahdieh Hadi wrote:
> http://ambermd.org/tutorials/basic/tutorial3/section1.htm
fixed now; thanks for the report.
> and unfortunately, I have the same problems with
> commands in the Amber 15 manual and this site "
> http://ambermd.org/tutorials/basic/tutorial1/section2.htm". I could not
> simulate the duplex DNA with the command:
> molecule m;
> m = fd_helix( "abdna", "aaaaaaaaaa", "dna" );
> I encounter this error, -bash: syntax error near unexpected token `('
These are lines that you put into a program.nab file, then compile using nab.
You can't just type them in the SHELL.
>
> I really appreciate it if you could provide me with an up to dated
> manual or site, so I could work with Amber tools15.
Just go to
http://ambermd.org/#AmberTools, scroll down a bit and click on
"Download AmberTools15".
...good luck....dac
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Received on Mon Feb 22 2016 - 13:30:03 PST
