thanks, it is fixed now, you were right, I missed to rename one Cys
On Mon, Feb 22, 2016 at 8:50 PM, David A Case <david.case.rutgers.edu>
wrote:
> On Mon, Feb 22, 2016, maryam azimzadehirani wrote:
>
> > I am trying to save parm and top file in leap but I am getting error with
> > disulfid bonds repeatedly. I have renamed bonded cys to cyx and I have
> > checked the bond commands. Please let me know what is the problem. I can
> > send you the pdb if needed.
>
> > Could not find bond parameter for: SH - S
>
> Are you *sure* you changed all the CYS residues to CYX? It looks like you
> still have an H bonded to S on one them, which to me implies that at least
> one
> residue name is still CYS rather than CYX.
>
> ....dac
>
>
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Received on Mon Feb 22 2016 - 22:30:04 PST
