[AMBER] problem with energy minimization (sander)

From: Maryam Hamzehee <maryam_h_7860.yahoo.com>
Date: Wed, 10 Feb 2016 12:26:06 +0000 (UTC)

Dear all
I am trying to do energy minimization with my protein, unfortunately it was stopped and gave the following error:
 NSTEP       ENERGY          RMS            GMAX         NAME    NUMBER     71     NaN            NaN              0.0000E+00     N           1
 BOND    =           NaN  ANGLE   =           NaN  DIHED      =           NaN VDWAALS =        0.0000  EEL     =        0.0000  EGB        =   -48743.1044 1-4 VDW =           NaN  1-4 EEL =           NaN  RESTRAINT  =        0.0000
The pdb file of protein as well as output file are attached.
Your help in this regard would be appreciated.

All the bestMaryam

 


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Received on Wed Feb 10 2016 - 04:30:05 PST
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