On Thu, Feb 11, 2016, Mongam Riba wrote:
> i am a student perusing masters in bioinformatics. i am working on a
> protein using amber 12 package and wanted to do the GIST analysis study.
> but i am not able to run the gist analysis using cpptraj command. so is
> there a way to install gist in amber12. if there then please can you help
> me out i shall be very thankful to you.
The gist analysis is a part of cpptraj in AmberTools, which is freely
available. You should download and install AmberTools15 (in a separate
directory tree: the top of the Amber12 tree is .../amber12, whereas the top of
the AmberTools15 tree will be .../amber14.) You can use the trajectories that
you generate with Amber12 as input to the gist analysis in AmberTools15.
...good luck....dac
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Received on Thu Feb 11 2016 - 04:30:03 PST
