[AMBER] unable to generate Mercury parameter file

From: Sehrish Naz Aijaz <sehrish.naz.outlook.com>
Date: Wed, 17 Feb 2016 10:06:51 +0500

Dear all,
I am facing problem in performing MD simulation of a system enclosing ligand and mercury but I am unable to generate parameters for mercury metal ion as I did not have expertise in Gaussian (QM) and DFT. Can anyone provide me mercury parameter files because whenever I generate mercury.mol2 it shows zero XYZ coordinates with zero charge. I have tried nonbonded metal ion script for zinc ions but unable to generate parameter as my mercury.mol2 files is always blank with zero coordinates and charge. Please help me what should I do and if anyone can provide the parameter file for mercury. Thanks

Regards,

Sehrish Naz
Jr. Research Fellow,
Computational Chemistry Unit.
Dr. Panjwani Center for Molecular Medicine and Drug Research,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75270.


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Received on Tue Feb 16 2016 - 21:30:03 PST
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