Re: [AMBER] Dear all

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Fri, 12 Feb 2016 04:40:26 -0800

As long as you have NMR equipment and safety goggles. :-)

On 2/12/16 4:18 AM, ankita mehta wrote:
> NMR distance restraints r ok to apply ?
>
> On Fri, Feb 12, 2016 at 5:42 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> NMR distance restraints.
>>
>> http://ambermd.org/tutorials/advanced/tutorial4/ - looks like you can
>> set upper bound in a 7-column file, then process it with makeDIST_RST.
>>
>> On 2/12/16 4:10 AM, ankita mehta wrote:
>>> Can u please send me exact link or page number in manual !
>>> Whatever i found that is for NMR restraints..
>>> thnks in advance
>>>
>>> On Fri, Feb 12, 2016 at 5:19 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>
>>>> It is described in the manual and probably one or more demos I suspect.
>>>>
>>>> On 2/12/16 3:40 AM, ankita mehta wrote:
>>>>> how it is done ?
>>>>>
>>>>>
>>>>> On Fri, Feb 12, 2016 at 5:06 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>>>
>>>>>> You could use weak distance restraints to nearby atoms.
>>>>>>
>>>>>> Bill
>>>>>>
>>>>>> On 2/12/16 3:03 AM, ankita mehta wrote:
>>>>>>> Dear All,
>>>>>>>
>>>>>>> I want to minimize a protein which contains Zn ion.
>>>>>>> But the problem is Zn ion is displacing from the position after
>>>>>>> minimization!
>>>>>>> Can u suggest the way through which position of Zn ion can be fixed.
>>>>>>> i am attaching t he leap.log file and min.out file..
>>>>>>> please suggest the way out!
>>>>>>>
>>>>>>> I shall be thankful!
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> AMBER mailing list
>>>>>>> AMBER.ambermd.org
>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>>> _______________________________________________
>>>>>> AMBER mailing list
>>>>>> AMBER.ambermd.org
>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>>>
>>>>> _______________________________________________
>>>>> AMBER mailing list
>>>>> AMBER.ambermd.org
>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Feb 12 2016 - 05:00:03 PST
Custom Search