Dear AMBER users
I'm now trying to generate parameters for FAD
but it faills with following error sign
[user1.hongserver FAD_temp]$ antechamber -i FAD_h.pdb -fi pdb -o FAD.mol2
-fo mol2 -c bcc -s 2
Running: /usr/local/amber14/bin/bondtype -j full -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac
For atom[1]:P1, the best APS is not zero, bonds involved by this atom are
frozen
For atom[3]:P2, the best APS is not zero, bonds involved by this atom are
frozen
The frozen atom type can only be 1, 2, 3, 7 (aromatic single), 8 (aromatic
double)Error: cannot run "/usr/local/amber14/bin/bondtype -j full -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac" in
judgebondtype() of antechamber.c properly, exit
Is there anybody who knows what the above error means ?
and Any kind of suggestion about how to solve this problem?
Attached files are template PDB(FAD_h.pdb).
Thanks
[?usn=13646389&email=croshong.nate.com&key=b44dfca3102e28c191431c7d5dda702a$
2da3df6b.mail3.nate.com]
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Received on Fri Feb 19 2016 - 02:30:04 PST
