Thank you guys, it is working...
On Fri, Feb 26, 2016 at 4:01 PM, mmaestre <mmaestre.gate.sinica.edu.tw>
wrote:
> Hi Mariam,
>
> I'm doing something similar at the moment. As Hai was saying, you can
> calculate vectors based on the distances between the centers of mass of
> your targets using the vector command in cpptraj. Once you have that, you
> can calculate the angle between them either directly in
> calc/excell/origin/your own script, or directly using the vectormath
> command in cpptraj. Just check both of them in the Amber 15 manual, they're
> pretty easy to use.
>
> Manuel
>
> -----Original message-----
> From:maryam azimzadehirani <maryamai1988.gmail.com>
> To:AMBER Mailing List <amber.ambermd.org>
> Date:Fri, 26 Feb 2016 15:20:57
> Subject:[AMBER] the angle between two axis
>
> Dear Amber users,
> I want to calculate the angle between two axis which each of them is the
> axes joining the centre of mass of two subdomains. I already looked for it
> in the amber mailing list, I couldn’t find any posts. Can you advice me in
> this regards.
> thanks
> Maryam
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Received on Fri Feb 26 2016 - 00:30:05 PST
