[AMBER] Unable to run QM/MM with RNA and sodium ion

From: kaushik chakraborty <kaushik290187.gmail.com>
Date: Thu, 11 Feb 2016 11:57:39 -0500

Dear All,

I was trying to perform qm/mm simulation of a RNA molecule using CHARMM
forcefield
in amber 12. It was running fine when I there is only RNA atoms within the
QM region.
But as I consider one Na+ ion along with RNA atoms within the QM region it
was showing that
"Unable to correctly identify element SOD".

  Could you please help me or give me any advice about this error?
Thanks in advance!

Kaushik
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Received on Thu Feb 11 2016 - 09:00:05 PST
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