Thanks Jason,
Could you please provide some details on how one might access those hidden
files? Is it stores in some kind of files or do we need to extract it? I am
kind of new here in Amber. Any help would be greatly appreciated.
Also, if I email you the original PDB and prmtop files, is there anyway you
would have time to look at those and see if I am doing anything wrong in
separating those two individual PDBs from the complex? I will email those
to your gmail if it is ok with you.
Thanks again for your valuable time.
On Wed, Feb 10, 2016 at 12:00 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> On Wed, Feb 10, 2016 at 10:53 AM, Arati Paudyal <apsilwal123.gmail.com>
> wrote:
>
> > Thanks for your reply,
> >
> > I will try to upgrade to Ambertools 15. But since the tutorial works just
> > fine, do you think this could be any issue related to upgrade though? I
> > will follow your suggestion and see how this goes.
> >
>
> We would need to see the output from cpptraj as it tried to compute
> surface areas. There's almost certainly an error message hidden in there
> that will tell us what the problem is.
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Wed Feb 10 2016 - 16:00:03 PST
