you can use cpptraj to do that
cat > traj.in <<EOF
parm your_pdb.pdb
trajin your_pdb.pdb
distance .3 .7 out atom_3_7_distance.dat
EOF
cpptraj -i traj.in
Hai
On Wed, Feb 10, 2016 at 10:39 AM, Vasantha Kumar <vin.vasanth.gmail.com>
wrote:
> Dear AMBER user
>
>
> Is there is a way to extract distances between atoms directly from a PDB
> file. Could you please suggest me some scripts or software package?
>
> thanks in advance..
> Vince
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Received on Wed Feb 10 2016 - 08:00:06 PST
