Jason,
I tried a short run with AmberTools 15 and I still get the same error
message. I re-ran the tutorial and it runs fine with AmberTools 15 as well.
On Wed, Feb 10, 2016 at 9:15 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> Have you tried yet with AmberTools 15?
>
> On Wed, Feb 10, 2016 at 6:42 PM, Arati Paudyal <apsilwal123.gmail.com>
> wrote:
>
> > Thanks Jason,
> >
> > Could you please provide some details on how one might access those
> hidden
> > files? Is it stores in some kind of files or do we need to extract it? I
> am
> > kind of new here in Amber. Any help would be greatly appreciated.
> >
> > Also, if I email you the original PDB and prmtop files, is there anyway
> you
> > would have time to look at those and see if I am doing anything wrong in
> > separating those two individual PDBs from the complex? I will email those
> > to your gmail if it is ok with you.
> >
> >
> >
> > Thanks again for your valuable time.
> >
> > On Wed, Feb 10, 2016 at 12:00 PM, Jason Swails <jason.swails.gmail.com>
> > wrote:
> >
> > > On Wed, Feb 10, 2016 at 10:53 AM, Arati Paudyal <apsilwal123.gmail.com
> >
> > > wrote:
> > >
> > > > Thanks for your reply,
> > > >
> > > > I will try to upgrade to Ambertools 15. But since the tutorial works
> > just
> > > > fine, do you think this could be any issue related to upgrade
> though? I
> > > > will follow your suggestion and see how this goes.
> > > >
> > >
> > > We would need to see the output from cpptraj as it tried to compute
> > > surface areas. There's almost certainly an error message hidden in
> there
> > > that will tell us what the problem is.
> > >
> > > HTH,
> > > Jason
> > >
> > > --
> > > Jason M. Swails
> > > BioMaPS,
> > > Rutgers University
> > > Postdoctoral Researcher
> > > _______________________________________________
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> > >
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> >
>
>
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Feb 11 2016 - 05:00:06 PST
