[AMBER] Query regarding extracting protons from coordinate/trajectory file

From: Madhura De <madhura92life.gmail.com>
Date: Wed, 24 Feb 2016 14:12:16 +0530

Hello!

I use Amber14 suite. I am about to do an NMR refinement of a DNA duplex and
will be using IRMA (http://www.nmr.chem.uu.nl/Software/irma.php). The input
file for IRMA requires only protons to be extracted from all-atom
coordinate or trajectory file.
Can you tell me the command by which I can extract only the protons from
mdcrd or pdb file?

Madhura
Bose Institute
India
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Received on Wed Feb 24 2016 - 01:00:03 PST
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