Amber Archive Jun 2016: by subject

Ziba Bahadori (Sat Jun 25 2016 - 23:00:04 PDT)
[AMBER] 9. Hidden parameters for tleap
- David A Case (Thu Jun 30 2016 - 05:29:52 PDT)
- Lea Natalia Toledo Carvajal (Wed Jun 29 2016 - 03:09:26 PDT)
[AMBER] [Amber] Build parameters on HEME-Fe-HIS system
- 163邮箱 (Sun Jun 05 2016 - 08:28:22 PDT)
[AMBER] [ANN] Release of NGLView for interactive trajectory visualization in Jupyter notebooks.
- Hai Nguyen (Tue Jun 14 2016 - 11:05:11 PDT)
[AMBER] ABOUT the GaMD patch for Amber14
- Neha Gandhi (Wed Jun 15 2016 - 09:36:05 PDT)
- Yeng-Tseng Wang (Wed Jun 15 2016 - 09:14:05 PDT)
- Ross Walker (Wed Jun 15 2016 - 09:05:52 PDT)
- Yeng-Tseng Wang (Wed Jun 15 2016 - 08:50:45 PDT)
[AMBER] addAtomType problem
- zoran matovic (Thu Jun 30 2016 - 10:00:32 PDT)
- Lea Natalia Toledo Carvajal (Thu Jun 30 2016 - 08:58:49 PDT)
[AMBER] adding missing ligand records to $AMBERHOME/dat/reduce_wwPDB_het_dict.txt
- David A Case (Thu Jun 30 2016 - 05:25:49 PDT)
- Jose Manuel Gally (Thu Jun 30 2016 - 00:48:14 PDT)
[AMBER] addition of hydrogen to unionised the -COO group
- Martina Devi (Mon Jun 13 2016 - 23:59:53 PDT)
- David A Case (Sat Jun 11 2016 - 18:18:45 PDT)
- Martina Devi (Sat Jun 11 2016 - 11:00:32 PDT)
- David A Case (Sat Jun 11 2016 - 09:53:04 PDT)
- Martina Devi (Fri Jun 10 2016 - 08:00:42 PDT)
[AMBER] Advice for Implicit Solvent MD with Nucleic Acids
- Nhai (Wed Jun 29 2016 - 09:07:07 PDT)
- Kasprzak, Wojciech (NIH/NCI) [C] (Wed Jun 29 2016 - 08:47:45 PDT)
- Nhai (Wed Jun 29 2016 - 08:37:18 PDT)
- Carlos Simmerling (Wed Jun 29 2016 - 08:29:58 PDT)
- Kasprzak, Wojciech (NIH/NCI) [C] (Wed Jun 29 2016 - 08:04:16 PDT)
- Carlos Simmerling (Wed Jun 29 2016 - 07:33:21 PDT)
- Kasprzak, Wojciech (NIH/NCI) [C] (Wed Jun 29 2016 - 07:22:16 PDT)
[AMBER] Amber Cpptraj troubleshoot
- David A Case (Wed Jun 01 2016 - 17:04:42 PDT)
- Hai Nguyen (Wed Jun 01 2016 - 16:40:45 PDT)
- Hai Nguyen (Wed Jun 01 2016 - 16:38:15 PDT)
- Angelina Malagodi (Wed Jun 01 2016 - 16:37:08 PDT)
- Angelina Malagodi (Wed Jun 01 2016 - 16:34:52 PDT)
- Daniel Roe (Wed Jun 01 2016 - 16:25:37 PDT)
- Hai Nguyen (Wed Jun 01 2016 - 16:02:59 PDT)
- Angelina Malagodi (Wed Jun 01 2016 - 15:55:50 PDT)
[AMBER] AMBER Digest, Vol 1616, Issue 1
- bharat gupta (Sun Jun 26 2016 - 08:09:49 PDT)
[AMBER] AMBER Digest, Vol 1618, Issue 1
- bharat gupta (Mon Jun 27 2016 - 06:06:42 PDT)
- bharat gupta (Sun Jun 26 2016 - 18:06:36 PDT)
[AMBER] AMBER support for gtx1080
- Zack Scholl (Thu Jun 23 2016 - 07:35:33 PDT)
- Charles Lin (Wed Jun 22 2016 - 02:17:40 PDT)
- Anton Perera (Tue Jun 21 2016 - 21:56:06 PDT)
[AMBER] Amber14 & Cuda 7.5
- Irfan Alibay (Tue Jun 07 2016 - 07:16:08 PDT)
- Nikolay N. Kuzmich (Tue Jun 07 2016 - 05:03:52 PDT)
[AMBER] Amber16 + GTX1080 - working well
- Zack Scholl (Wed Jun 29 2016 - 12:02:25 PDT)
- Ross Walker (Fri Jun 24 2016 - 06:11:50 PDT)
- Beavil, Andrew (Thu Jun 23 2016 - 13:49:26 PDT)
[AMBER] Amber16 and CUDA8.0 pmemd.cuda worked, and then stopped working, saying "cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
- Zack Scholl (Tue Jun 21 2016 - 09:44:14 PDT)
[AMBER] amber16 pmemd cuda rst file
- David A Case (Mon Jun 20 2016 - 11:41:10 PDT)
- Hannes Loeffler (Mon Jun 20 2016 - 08:28:10 PDT)
- David A Case (Sat Jun 18 2016 - 05:33:16 PDT)
- David A Case (Fri Jun 17 2016 - 05:01:04 PDT)
- Hannes Loeffler (Fri Jun 17 2016 - 03:35:09 PDT)
- Marc van der Kamp (Fri Jun 17 2016 - 03:07:25 PDT)
- Daniel Roe (Wed Jun 15 2016 - 08:32:16 PDT)
- Daniel Roe (Tue Jun 14 2016 - 14:59:10 PDT)
- Neha Gandhi (Tue Jun 14 2016 - 14:49:15 PDT)
- Daniel Roe (Tue Jun 14 2016 - 14:34:56 PDT)
- Neha Gandhi (Tue Jun 14 2016 - 14:29:43 PDT)
[AMBER] Amber16 won't install
- Hai Nguyen (Fri Jun 03 2016 - 11:43:08 PDT)
- Gulsevin,Alican (Fri Jun 03 2016 - 10:58:43 PDT)
- Hai Nguyen (Fri Jun 03 2016 - 10:25:02 PDT)
- Gulsevin,Alican (Fri Jun 03 2016 - 10:22:41 PDT)
- Hai Nguyen (Fri Jun 03 2016 - 10:11:40 PDT)
- Hai Nguyen (Fri Jun 03 2016 - 10:11:00 PDT)
- Gulsevin,Alican (Fri Jun 03 2016 - 04:01:23 PDT)
[AMBER] Amber16+CUDA8.0 pmemd.cuda worked, and then stopped working, saying "cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
- Zack Scholl (Tue Jun 21 2016 - 08:03:19 PDT)
[AMBER] Ambertools16 error compiling
- Hai Nguyen (Wed Jun 29 2016 - 10:56:48 PDT)
- Esteban Gabriel Vega Hissi (Wed Jun 29 2016 - 10:43:36 PDT)
[AMBER] Ambertools16 test failed for leap
- zmatovic.kg.ac.rs (Sat Jun 04 2016 - 23:50:31 PDT)
- David A Case (Sat Jun 04 2016 - 21:46:51 PDT)
- zoran matovic (Sat Jun 04 2016 - 14:18:22 PDT)
[AMBER] antechamber error message
- David A Case (Tue Jun 14 2016 - 09:27:29 PDT)
- Martina Devi (Tue Jun 14 2016 - 08:04:31 PDT)
- David A Case (Tue Jun 14 2016 - 04:55:24 PDT)
- Martina Devi (Tue Jun 14 2016 - 00:02:07 PDT)
[AMBER] bad atom type decomp
- Hai Nguyen (Thu Jun 30 2016 - 19:12:33 PDT)
- Bruno Falcone (Thu Jun 30 2016 - 11:33:39 PDT)
[AMBER] Bad atom type: FE when calculating free energy using mmpbsa
- David A Case (Tue Jun 21 2016 - 05:29:02 PDT)
- 163邮箱 (Tue Jun 21 2016 - 01:08:34 PDT)
[AMBER] buffer OR buffer_xyz_list in setBox command
- mish (Wed Jun 08 2016 - 18:35:35 PDT)
[AMBER] Can I turn off group coordinate averaging?
- David A Case (Mon Jun 13 2016 - 10:54:50 PDT)
- tanfei777.sina.cn (Sun Jun 12 2016 - 21:59:17 PDT)
[AMBER] can we sample ligand conformation in Amber
- Albert (Mon Jun 27 2016 - 01:13:57 PDT)
- Albert (Sun Jun 26 2016 - 11:45:41 PDT)
- Carlos Simmerling (Sun Jun 26 2016 - 11:45:09 PDT)
- Ilyas Yildirim (Sun Jun 26 2016 - 11:39:33 PDT)
- Albert (Sun Jun 26 2016 - 11:31:43 PDT)
[AMBER] charge of aminoacids in an special pH
- Marc van der Kamp (Tue Jun 28 2016 - 01:29:20 PDT)
- Atila Petrosian (Tue Jun 28 2016 - 00:18:01 PDT)
[AMBER] Choose reference frame for rmsd
- Jean-Patrick Francoia (Mon Jun 13 2016 - 12:43:42 PDT)
- Daniel Roe (Mon Jun 13 2016 - 07:18:46 PDT)
- Jean-Patrick Francoia (Mon Jun 13 2016 - 05:55:31 PDT)
[AMBER] Clustering of MD trajectories: ptraj, cpptraj
- Daniel Roe (Mon Jun 06 2016 - 12:57:41 PDT)
[AMBER] compiling reduce with gcc6
- David A Case (Thu Jun 30 2016 - 05:45:07 PDT)
[AMBER] convergence criteria in enhanced md techniques
- Daniel Roe (Wed Jun 22 2016 - 06:07:42 PDT)
- Neha Gandhi (Wed Jun 22 2016 - 05:43:18 PDT)
[AMBER] convert mol2 to pdb
- Hai Nguyen (Wed Jun 29 2016 - 23:56:56 PDT)
- FyD (Wed Jun 29 2016 - 23:27:26 PDT)
- FyD (Wed Jun 29 2016 - 23:22:27 PDT)
- Martina Devi (Wed Jun 29 2016 - 08:24:40 PDT)
- Hai Nguyen (Wed Jun 29 2016 - 08:15:12 PDT)
- Gerald Monard (Wed Jun 29 2016 - 08:08:39 PDT)
- Martina Devi (Wed Jun 29 2016 - 08:04:56 PDT)
- Hai Nguyen (Wed Jun 29 2016 - 08:02:46 PDT)
- Martina Devi (Wed Jun 29 2016 - 07:57:36 PDT)
[AMBER] convert mol2 to prepin
- Martina Devi (Tue Jun 28 2016 - 09:40:39 PDT)
[AMBER] cpinutil.py problem
- Elisa Pieri (Mon Jun 06 2016 - 07:30:33 PDT)
- Elisa Pieri (Mon Jun 06 2016 - 07:21:43 PDT)
- Jason Swails (Mon Jun 06 2016 - 07:16:07 PDT)
- Elisa Pieri (Mon Jun 06 2016 - 06:46:53 PDT)
[AMBER] cpptraj analysis of water in cavity
- Daniel Roe (Fri Jun 24 2016 - 10:31:49 PDT)
- Michael Shokhen (Fri Jun 24 2016 - 00:58:04 PDT)
[AMBER] cpptraj clustering based on ligand cavity
- Daniel Roe (Wed Jun 01 2016 - 07:45:51 PDT)
- Neha Gandhi (Tue May 31 2016 - 18:28:22 PDT)
[AMBER] cpptraj reading a reference coordinate for analyses
- Daniel Roe (Tue Jun 07 2016 - 07:56:29 PDT)
- Neha Gandhi (Tue Jun 07 2016 - 01:43:18 PDT)
[AMBER] cutoff and switching
- Bisignano, Paola (Wed Jun 29 2016 - 18:00:40 PDT)
- Bisignano, Paola (Wed Jun 29 2016 - 17:59:56 PDT)
- Ross Walker (Wed Jun 29 2016 - 17:48:20 PDT)
- Bisignano, Paola (Wed Jun 29 2016 - 17:24:15 PDT)
[AMBER] Density File
- David A Case (Wed Jun 15 2016 - 04:49:45 PDT)
- Wong Li Zhe (Tue Jun 14 2016 - 19:27:36 PDT)
[AMBER] Difference between radius of gyration and max radius of gyration
- Jean-Patrick Francoia (Tue Jun 14 2016 - 08:11:47 PDT)
- Daniel Roe (Tue Jun 14 2016 - 07:45:13 PDT)
- Jean-Patrick Francoia (Tue Jun 14 2016 - 04:42:12 PDT)
[AMBER] difference in ptraj for ambertools-12 and 15
- Thakur, Abhishek (Tue Jun 28 2016 - 13:54:54 PDT)
[AMBER] Dismal QM/MM Efficiency
- Dr. Andreas W. Goetz (Wed Jun 08 2016 - 13:51:05 PDT)
- Jason Swails (Wed Jun 08 2016 - 13:14:11 PDT)
- Nisler, Collin R. (Wed Jun 08 2016 - 12:31:30 PDT)
- Nisler, Collin R. (Wed Jun 08 2016 - 12:29:29 PDT)
- Dr. Andreas W. Goetz (Wed Jun 08 2016 - 12:16:36 PDT)
- Adrian Roitberg (Wed Jun 08 2016 - 12:14:04 PDT)
- Nisler, Collin R. (Wed Jun 08 2016 - 11:52:45 PDT)
[AMBER] Distorted and clumped structures after cpptraj average structure calculation
- David A Case (Mon Jun 27 2016 - 05:10:49 PDT)
- Dr. Anselm Horn (Mon Jun 27 2016 - 04:44:15 PDT)
- Prayagraj Fandilolu (Mon Jun 27 2016 - 03:52:57 PDT)
[AMBER] Does Amber14 work with CUDA higher than 6.5?
- Markowska (Wed Jun 29 2016 - 11:13:18 PDT)
- Ross Walker (Wed Jun 29 2016 - 09:25:33 PDT)
- Thakur, Abhishek (Wed Jun 29 2016 - 07:16:25 PDT)
- Karolina Markowska (Wed Jun 29 2016 - 00:25:44 PDT)
[AMBER] energy decomposition
- Sanjib Paul (Fri Jun 17 2016 - 03:22:46 PDT)
- David A Case (Thu Jun 09 2016 - 08:13:13 PDT)
- Sanjib Paul (Wed Jun 08 2016 - 23:55:35 PDT)
[AMBER] Energy decomposition in MM/GBSA
- mish (Tue Jun 07 2016 - 22:35:21 PDT)
[AMBER] Entropy normal mode error
- SHAILESH KUMAR (Thu Jun 16 2016 - 10:10:23 PDT)
- George Tzotzos (Thu Jun 16 2016 - 08:08:16 PDT)
[AMBER] equilibration problem
- esther nehu (Wed Jun 29 2016 - 09:43:48 PDT)
- Thakur, Abhishek (Wed Jun 29 2016 - 09:34:19 PDT)
- esther nehu (Wed Jun 29 2016 - 09:24:05 PDT)
- Thakur, Abhishek (Wed Jun 29 2016 - 09:00:09 PDT)
- esther nehu (Wed Jun 29 2016 - 08:39:35 PDT)
- Thakur, Abhishek (Wed Jun 29 2016 - 08:17:54 PDT)
- esther nehu (Wed Jun 29 2016 - 08:07:01 PDT)
- Thakur, Abhishek (Wed Jun 29 2016 - 07:27:51 PDT)
- esther nehu (Tue Jun 28 2016 - 22:40:59 PDT)
[AMBER] Error in MCPB.py
- Pengfei Li (Thu Jun 23 2016 - 14:51:35 PDT)
- Fabrício Bracht (Thu Jun 23 2016 - 10:38:27 PDT)
- Marcelo Andrade Chagas (Thu Jun 23 2016 - 10:27:58 PDT)
- Fabrício Bracht (Thu Jun 23 2016 - 09:19:31 PDT)
[AMBER] Error in MMPBSA
- Jason Swails (Thu Jun 23 2016 - 10:00:39 PDT)
- Shreeramesh (Thu Jun 23 2016 - 07:50:16 PDT)
[AMBER] Error in tleap for the atom type of OCT1 and OCT2 of glutamic acid at C-terminal
- Daniel Roe (Mon Jun 13 2016 - 07:36:14 PDT)
- Shreeramesh (Mon Jun 13 2016 - 03:11:57 PDT)
- David A Case (Sat Jun 11 2016 - 09:50:01 PDT)
- Shreeramesh (Fri Jun 10 2016 - 07:16:49 PDT)
[AMBER] Error while trying to upgrade AmberTools 15
- Jason Swails (Wed Jun 08 2016 - 03:31:16 PDT)
- Nikolay N. Kuzmich (Wed Jun 08 2016 - 02:48:28 PDT)
[AMBER] Error: [cluster] Not all arguments handled: [ pdb ]
- Thakur, Abhishek (Tue Jun 28 2016 - 14:36:32 PDT)
- Hai Nguyen (Tue Jun 28 2016 - 14:07:54 PDT)
- Thakur, Abhishek (Tue Jun 28 2016 - 13:59:18 PDT)
[AMBER] Errors in my installation
- Abdul-Rashid Iii Sampaco (Tue Jun 14 2016 - 20:52:26 PDT)
- Abdul-Rashid Iii Sampaco (Tue Jun 14 2016 - 20:50:06 PDT)
- koushik kasavajhala (Tue Jun 14 2016 - 20:44:48 PDT)
- Hai Nguyen (Tue Jun 14 2016 - 20:26:23 PDT)
- Abdul-Rashid Iii Sampaco (Tue Jun 14 2016 - 20:21:57 PDT)
- Hai Nguyen (Tue Jun 14 2016 - 19:59:33 PDT)
- Abdul-Rashid Iii Sampaco (Tue Jun 14 2016 - 19:54:35 PDT)
- Hai Nguyen (Tue Jun 14 2016 - 19:48:28 PDT)
- Abdul-Rashid Iii Sampaco (Tue Jun 14 2016 - 19:06:50 PDT)
- Hai Nguyen (Tue Jun 14 2016 - 07:25:08 PDT)
- David A Case (Tue Jun 14 2016 - 05:00:47 PDT)
- Marcelo Andrade Chagas (Tue Jun 14 2016 - 04:47:26 PDT)
- Abdul-Rashid Iii Sampaco (Tue Jun 14 2016 - 01:22:56 PDT)
[AMBER] extremely slow cluster analysis with cpptraj
- Daniel Roe (Thu Jun 16 2016 - 07:39:56 PDT)
- Michael Shokhen (Thu Jun 16 2016 - 01:17:18 PDT)
[AMBER] FF14SB implementation
- Carlos Simmerling (Tue Jun 14 2016 - 06:46:40 PDT)
- Vlad Cojocaru (Tue Jun 14 2016 - 06:41:42 PDT)
- Carlos Simmerling (Tue Jun 14 2016 - 06:17:33 PDT)
- Miroslav Krepl (Tue Jun 14 2016 - 06:14:23 PDT)
- Vlad Cojocaru (Tue Jun 14 2016 - 05:53:25 PDT)
- David A Case (Tue Jun 14 2016 - 05:04:30 PDT)
- Miroslav Krepl (Fri Jun 10 2016 - 06:37:38 PDT)
[AMBER] Free energy decomposition of QM/MM-GBSA
- Jason Swails (Tue Jun 14 2016 - 20:12:07 PDT)
- Allen Zou (Sat Jun 11 2016 - 07:48:37 PDT)
[AMBER] Fwd: eChemInfo Workshop on Rational Drug Design in Milano
- Thomas Exner (Mon Jun 13 2016 - 23:01:44 PDT)
[AMBER] Fwd: equilibration problem
- esther nehu (Tue Jun 28 2016 - 22:41:51 PDT)
[AMBER] GAFF2 setup
- David A Case (Tue Jun 21 2016 - 05:49:11 PDT)
- Igor Marques (Fri Jun 03 2016 - 12:40:19 PDT)
[AMBER] GB-neck2 MD with nucleic acids
- Hai Nguyen (Thu Jun 30 2016 - 12:23:39 PDT)
- Kasprzak, Wojciech (NIH/NCI) [C] (Thu Jun 30 2016 - 12:09:59 PDT)
- Carlos Simmerling (Thu Jun 30 2016 - 12:02:46 PDT)
- Hai Nguyen (Thu Jun 30 2016 - 11:48:00 PDT)
- Kasprzak, Wojciech (NIH/NCI) [C] (Thu Jun 30 2016 - 11:29:48 PDT)
[AMBER] GIST calculation
- Sanjib Paul (Sat Jun 18 2016 - 04:46:05 PDT)
[AMBER] hanging test mdgx/1p7e for installation to 'long' path
- Kenneth Hoste (Fri Jun 10 2016 - 04:19:14 PDT)
- David Cerutti (Wed Jun 08 2016 - 14:53:29 PDT)
- Kenneth Hoste (Wed Jun 08 2016 - 13:28:23 PDT)
[AMBER] Help me with double ambiguous noe.map files!!! PLEASE
- Duggan, Brendan (Mon Jun 13 2016 - 10:26:18 PDT)
- David A Case (Sun Jun 12 2016 - 06:09:52 PDT)
- tanfei777.sina.cn (Sun Jun 12 2016 - 00:28:05 PDT)
[AMBER] Hidden parameters for tleap
- David A Case (Tue Jun 28 2016 - 07:10:19 PDT)
- Lea Natalia Toledo Carvajal (Tue Jun 28 2016 - 04:22:01 PDT)
[AMBER] how to calculate the correlation function for first water shell?
- Hai Nguyen (Thu Jun 30 2016 - 19:29:19 PDT)
- Parviz Seifpanahi Shabane (Thu Jun 30 2016 - 09:20:10 PDT)
[AMBER] How to compare protein dynamics in free and bound-ligands states with cpptraj
- Adrian Roitberg (Fri Jun 24 2016 - 11:42:54 PDT)
- Kat G (Fri Jun 24 2016 - 11:38:37 PDT)
[AMBER] How to define COM group of atoms greater than 1024 atoms when nmropt=1 and pmemd.cuda.MPI
- Shuntaro Chiba (Wed Jun 08 2016 - 08:07:55 PDT)
[AMBER] HYDROGEN BONDING ANALYSIS
- Hai Nguyen (Fri Jun 24 2016 - 07:41:38 PDT)
- chemjxn (Fri Jun 24 2016 - 04:35:19 PDT)
[AMBER] Imaging problem?
- Carlos Simmerling (Fri Jun 17 2016 - 04:08:21 PDT)
- Dr. Anselm Horn (Fri Jun 17 2016 - 03:48:31 PDT)
- colvin (Fri Jun 17 2016 - 00:06:52 PDT)
- colvin (Fri Jun 17 2016 - 00:02:04 PDT)
- Dr. Anselm Horn (Thu Jun 16 2016 - 03:31:06 PDT)
- colvin (Wed Jun 15 2016 - 21:11:39 PDT)
[AMBER] INDIGO-DataCloud Newsletter, May 2016
- galileo.galile22.yahoo.com (Thu Jun 09 2016 - 02:28:03 PDT)
[AMBER] Issue of AMBER 2016 with CUDA
- Jason Swails (Tue Jun 07 2016 - 20:51:14 PDT)
- Huian Li (Tue Jun 07 2016 - 08:23:05 PDT)
- David A Case (Mon Jun 06 2016 - 08:05:49 PDT)
- Huian Li (Mon Jun 06 2016 - 06:24:07 PDT)
[AMBER] Issue with with the nocenter in tLeap
- Daniel Roe (Fri Jun 24 2016 - 10:33:47 PDT)
- Sushil Mishra (Thu Jun 23 2016 - 16:49:36 PDT)
- Daniel Roe (Thu Jun 23 2016 - 08:09:28 PDT)
- Sushil Mishra (Wed Jun 22 2016 - 21:58:23 PDT)
- David A Case (Wed Jun 22 2016 - 20:22:04 PDT)
- Sushil Mishra (Thu Jun 09 2016 - 23:39:02 PDT)
[AMBER] iwrap and mmpbsa
- Jason Swails (Fri Jun 03 2016 - 12:04:41 PDT)
- Mary Varughese (Fri Jun 03 2016 - 03:16:40 PDT)
[AMBER] Library errors while using NAB on Amber16
- David A Case (Wed Jun 29 2016 - 18:53:19 PDT)
- Slava Chushak (Wed Jun 29 2016 - 12:01:04 PDT)
[AMBER] Lipidorder/No output
- Daniel Roe (Wed Jun 15 2016 - 07:09:29 PDT)
- Hannes Loeffler (Wed Jun 15 2016 - 07:04:35 PDT)
- Batuhan Kav (Wed Jun 15 2016 - 06:42:40 PDT)
- Hannes Loeffler (Wed Jun 15 2016 - 06:11:39 PDT)
- Batuhan Kav (Wed Jun 15 2016 - 05:23:28 PDT)
- Hannes Loeffler (Wed Jun 15 2016 - 04:13:14 PDT)
- Batuhan Kav (Wed Jun 15 2016 - 03:24:49 PDT)
- Hannes Loeffler (Wed Jun 15 2016 - 03:19:14 PDT)
- Batuhan Kav (Wed Jun 15 2016 - 02:56:31 PDT)
[AMBER] MCPB
- Pengfei Li (Thu Jun 30 2016 - 09:51:41 PDT)
- Pengfei Li (Thu Jun 30 2016 - 09:42:27 PDT)
- Fabrício Bracht (Wed Jun 29 2016 - 12:00:55 PDT)
- Marcelo Andrade Chagas (Wed Jun 29 2016 - 09:57:35 PDT)
- Fabrício Bracht (Wed Jun 29 2016 - 09:50:15 PDT)
- Fabrício Bracht (Wed Jun 29 2016 - 09:32:57 PDT)
- Pengfei Li (Tue Jun 28 2016 - 07:33:03 PDT)
- Fabrício Bracht (Mon Jun 27 2016 - 12:56:17 PDT)
[AMBER] MD simulations with jar=1 and more than one nmropt restraint
- Feng Pan (Wed Jun 08 2016 - 09:01:14 PDT)
- James Murdock (Wed Jun 08 2016 - 03:39:46 PDT)
[AMBER] mdl file for 1d-rism
- Tyler Luchko (Lists) (Tue Jun 21 2016 - 10:37:31 PDT)
- Jingyi Yan (Thu Jun 02 2016 - 14:51:58 PDT)
[AMBER] measures of data reliability in Steered MD
- Adrian Roitberg (Thu Jun 23 2016 - 07:27:51 PDT)
- Asmita Gupta (Thu Jun 23 2016 - 07:25:30 PDT)
[AMBER] mmgbsa calculation
- Jason Swails (Thu Jun 02 2016 - 06:11:56 PDT)
- chemjxn (Wed Jun 01 2016 - 17:25:53 PDT)
[AMBER] mmpbsa analys
- Jason Swails (Thu Jun 02 2016 - 10:44:20 PDT)
- Ziba Bahadori (Thu Jun 02 2016 - 10:05:21 PDT)
[AMBER] mmpbsa doubt
- Mary Varughese (Thu Jun 16 2016 - 00:42:36 PDT)
[AMBER] Mmpbsa problem
- Ziba Bahadori (Sat Jun 25 2016 - 23:08:40 PDT)
- Ziba Bahadori (Sat Jun 04 2016 - 07:05:50 PDT)
[AMBER] MMPBSA.PY Error :LengthError: length mismatch in energy vectors
- Daniel Roe (Thu Jun 23 2016 - 07:18:46 PDT)
- 徐明远 (Thu Jun 23 2016 - 04:07:06 PDT)
[AMBER] MMPBSA.py nmode output problem
- Xiao-Lei Wang (Thu Jun 23 2016 - 07:56:34 PDT)
- Daniel Roe (Thu Jun 23 2016 - 07:17:09 PDT)
- Xiao-Lei Wang (Thu Jun 23 2016 - 05:38:00 PDT)
[AMBER] neuraminic acid
- mmaestre (Wed Jun 08 2016 - 01:01:41 PDT)
- Lachele Foley (Wed Jun 08 2016 - 00:52:47 PDT)
- mmaestre (Wed Jun 08 2016 - 00:44:00 PDT)
[AMBER] NMR restraints on GPU (asterisks in output)
- David A Case (Tue Jun 21 2016 - 05:34:25 PDT)
- Miroslav Krepl (Fri Jun 17 2016 - 02:21:15 PDT)
[AMBER] one more point about gcc6
- David A Case (Thu Jun 30 2016 - 06:06:24 PDT)
[AMBER] parmchk and parmchk2 segmentation fault
- David A Case (Wed Jun 01 2016 - 20:50:48 PDT)
- Neha Gandhi (Wed Jun 01 2016 - 18:41:51 PDT)
[AMBER] PCA error not
- Daniel Roe (Thu Jun 09 2016 - 11:41:27 PDT)
- Lara rajam (Thu Jun 09 2016 - 11:28:30 PDT)
[AMBER] prepin to mol2
- FyD (Wed Jun 29 2016 - 07:38:01 PDT)
- David A Case (Tue Jun 28 2016 - 10:18:31 PDT)
- Martina Devi (Tue Jun 28 2016 - 09:37:23 PDT)
[AMBER] Principal Component Analysis
- Jason Swails (Wed Jun 08 2016 - 19:36:05 PDT)
- Kat G (Wed Jun 08 2016 - 18:10:47 PDT)
[AMBER] Principle Component Analysis (PCA) in cpptraj
- Daniel Roe (Sun Jun 05 2016 - 12:42:14 PDT)
- Himanshu Joshi (Sun Jun 05 2016 - 12:17:54 PDT)
- Himanshu Joshi (Sun Jun 05 2016 - 11:28:48 PDT)
- Daniel Roe (Sun Jun 05 2016 - 10:58:08 PDT)
- Himanshu Joshi (Sat Jun 04 2016 - 06:14:43 PDT)
[AMBER] Principle component analysis: percentage contribution of eigenvectors
- Daniel Roe (Tue Jun 21 2016 - 07:21:51 PDT)
- Hirdesh Kumar (Tue Jun 21 2016 - 05:52:11 PDT)
[AMBER] Problem analysing output with process_mdout.perl script
- Ruth Helena Tichauer (Thu Jun 23 2016 - 08:10:22 PDT)
- Hai Nguyen (Wed Jun 22 2016 - 10:25:05 PDT)
- Ruth Helena Tichauer (Wed Jun 22 2016 - 06:22:44 PDT)
- David A Case (Tue Jun 21 2016 - 10:25:30 PDT)
- Ruth Helena Tichauer (Tue Jun 21 2016 - 08:46:40 PDT)
[AMBER] Problem in Calculating Rotational diffusion
- Daniel Roe (Mon Jun 13 2016 - 07:39:18 PDT)
- ATUL KUMAR (Sun Jun 12 2016 - 22:44:47 PDT)
- Daniel Roe (Sun Jun 12 2016 - 08:44:10 PDT)
- ATUL KUMAR (Sun Jun 12 2016 - 06:22:52 PDT)
[AMBER] Problem with PCA projection
- Daniel Roe (Tue Jun 21 2016 - 10:01:06 PDT)
- Kat G (Tue Jun 21 2016 - 09:26:01 PDT)
[AMBER] Problem with PCA projection (cont)
- Daniel Roe (Tue Jun 21 2016 - 10:50:49 PDT)
- Kat G (Tue Jun 21 2016 - 10:41:32 PDT)
[AMBER] Problem with SHAKE in water molecule
- David A Case (Sun Jun 26 2016 - 10:53:58 PDT)
[AMBER] Problem: Do not receive mails from Amber list but Amber digest
- SHAILESH KUMAR (Tue Jun 14 2016 - 11:12:05 PDT)
- Ross Walker (Tue Jun 14 2016 - 10:44:04 PDT)
- SHAILESH KUMAR (Tue Jun 14 2016 - 02:10:42 PDT)
[AMBER] problem:hydrogen bonding analysis contain water molecular
- Daniel Roe (Tue Jun 28 2016 - 05:32:52 PDT)
- chemjxn (Mon Jun 27 2016 - 21:35:00 PDT)
[AMBER] problems compiling cuda enabled amber on ubuntu 16.04
- mmaestre (Sat Jun 04 2016 - 21:08:43 PDT)
- Ross Walker (Sat Jun 04 2016 - 12:18:52 PDT)
- Mark Abraham (Sat Jun 04 2016 - 10:43:08 PDT)
- Ross Walker (Sat Jun 04 2016 - 09:36:52 PDT)
- Mark Abraham (Sat Jun 04 2016 - 07:31:11 PDT)
- mmaestre (Fri Jun 03 2016 - 22:41:40 PDT)
[AMBER] problems with building sulfo sialil-lacnac
- mmaestre (Mon Jun 13 2016 - 01:00:37 PDT)
[AMBER] Progress with testing GB-neck2 MD with nucleic acids
- Carlos Simmerling (Thu Jun 30 2016 - 17:27:17 PDT)
- Hai Nguyen (Thu Jun 30 2016 - 13:48:16 PDT)
- Kasprzak, Wojciech (NIH/NCI) [C] (Thu Jun 30 2016 - 13:16:19 PDT)
[AMBER] proper box size to calculate binding enthalpy of host-guest
- Budhathoki, Dipesh (Mon Jun 06 2016 - 20:32:01 PDT)
- Niel Henriksen (Mon Jun 06 2016 - 18:56:07 PDT)
- Budhathoki, Dipesh (Mon Jun 06 2016 - 18:36:40 PDT)
- Niel Henriksen (Mon Jun 06 2016 - 12:58:04 PDT)
- Budhathoki, Dipesh (Mon Jun 06 2016 - 11:06:55 PDT)
[AMBER] proper box size to calculate binding enthalpy of host-guest in explicit solvent
- Budhathoki, Dipesh (Sun Jun 05 2016 - 14:16:12 PDT)
- Budhathoki, Dipesh (Fri Jun 03 2016 - 10:27:42 PDT)
[AMBER] Protein - ligand tutorials - reg
- David A Case (Sun Jun 05 2016 - 13:04:07 PDT)
- Hai Nguyen (Sun Jun 05 2016 - 12:53:07 PDT)
- arthivenkat2.gmail.com (Sun Jun 05 2016 - 11:13:59 PDT)
[AMBER] pulling a zn ion with SMD
- Fabian gmail (Tue Jun 07 2016 - 02:04:42 PDT)
- Himanshu Joshi (Sun Jun 05 2016 - 06:58:57 PDT)
- Fabian gmail (Sun Jun 05 2016 - 04:29:05 PDT)
[AMBER] QM/MM - SCF converge error
- David A Case (Tue Jun 28 2016 - 04:35:52 PDT)
- bharat gupta (Tue Jun 28 2016 - 02:12:06 PDT)
[AMBER] QM/MM MD problem
- Debodyuti Dutta (Thu Jun 09 2016 - 21:31:55 PDT)
[AMBER] QM/MM simulation
- Gustavo Seabra (Wed Jun 29 2016 - 06:54:42 PDT)
- Marc van der Kamp (Wed Jun 29 2016 - 02:09:09 PDT)
- bharat gupta (Wed Jun 29 2016 - 01:44:46 PDT)
[AMBER] QMMM-MD
- Gustavo Seabra (Thu Jun 16 2016 - 08:08:28 PDT)
- Adrian Roitberg (Thu Jun 16 2016 - 06:05:48 PDT)
- David A Case (Thu Jun 16 2016 - 06:01:41 PDT)
- Odin Zeus (Wed Jun 15 2016 - 22:36:37 PDT)
[AMBER] QMS-QMMM
- Adrian Roitberg (Wed Jun 01 2016 - 06:30:37 PDT)
- Odin Zeus (Tue May 31 2016 - 20:51:50 PDT)
[AMBER] Query regarding dihedral angles
- Carlos Simmerling (Wed Jun 22 2016 - 03:19:38 PDT)
- Hai Nguyen (Tue Jun 21 2016 - 22:29:59 PDT)
- Sehrish Naz Aijaz (Tue Jun 21 2016 - 22:17:51 PDT)
[AMBER] radial (rdf) computation time
- Daniel Roe (Thu Jun 02 2016 - 08:50:27 PDT)
- Neha Gandhi (Wed Jun 01 2016 - 20:58:19 PDT)
- Daniel Roe (Wed Jun 01 2016 - 07:42:49 PDT)
- Neha Gandhi (Wed Jun 01 2016 - 00:28:03 PDT)
[AMBER] Radial Distribution Function
- Daniel Roe (Mon Jun 13 2016 - 11:46:23 PDT)
- Angelina Malagodi (Mon Jun 13 2016 - 11:43:56 PDT)
- Hai Nguyen (Mon Jun 13 2016 - 11:37:12 PDT)
- Angelina Malagodi (Mon Jun 13 2016 - 11:32:38 PDT)
- Daniel Roe (Mon Jun 13 2016 - 11:02:18 PDT)
- Angelina Malagodi (Mon Jun 13 2016 - 10:50:39 PDT)
- Daniel Roe (Mon Jun 13 2016 - 10:44:37 PDT)
- Angelina Malagodi (Mon Jun 13 2016 - 10:38:24 PDT)
[AMBER] radial distribution function tails for liquids using GAFF
- Conor Parks (Sat Jun 11 2016 - 11:41:49 PDT)
- David A Case (Sat Jun 11 2016 - 10:26:24 PDT)
- conor parks (Fri Jun 10 2016 - 18:51:35 PDT)
[AMBER] rdf or watershell
- Daniel Roe (Wed Jun 01 2016 - 07:47:45 PDT)
- Neha Gandhi (Tue May 31 2016 - 18:31:54 PDT)
[AMBER] re imaging doubt
- Hai Nguyen (Fri Jun 03 2016 - 07:36:13 PDT)
- Mary Varughese (Fri Jun 03 2016 - 03:58:20 PDT)
[AMBER] Reading and Writing mdfrc files generated by pmemd
- SHAILESH KUMAR (Sat Jun 25 2016 - 09:02:27 PDT)
- Daniel Roe (Sat Jun 25 2016 - 05:42:57 PDT)
- SHAILESH KUMAR (Sat Jun 25 2016 - 02:36:40 PDT)
- Daniel Roe (Thu Jun 23 2016 - 10:30:27 PDT)
- Daniel Roe (Wed Jun 22 2016 - 04:50:50 PDT)
- SHAILESH KUMAR (Wed Jun 22 2016 - 01:00:06 PDT)
- Daniel Roe (Mon Jun 20 2016 - 11:45:06 PDT)
- Daniel Roe (Sat Jun 18 2016 - 07:17:09 PDT)
- SHAILESH KUMAR (Sat Jun 18 2016 - 02:44:15 PDT)
- Daniel Roe (Fri Jun 17 2016 - 12:44:43 PDT)
- SHAILESH KUMAR (Thu Jun 16 2016 - 11:56:34 PDT)
- SHAILESH KUMAR (Thu Jun 16 2016 - 10:52:50 PDT)
- Hai Nguyen (Thu Jun 16 2016 - 10:41:48 PDT)
- Hai Nguyen (Thu Jun 16 2016 - 10:07:42 PDT)
- SHAILESH KUMAR (Thu Jun 16 2016 - 09:53:28 PDT)
- Hai Nguyen (Thu Jun 16 2016 - 07:54:55 PDT)
- SHAILESH KUMAR (Thu Jun 16 2016 - 06:33:21 PDT)
[AMBER] Regarding error in MMPBSA
- MOHD HOMAIDUR RAHMAN (Fri Jun 10 2016 - 14:35:26 PDT)
[AMBER] Regarding ho parameter in gaff
- MOHD HOMAIDUR RAHMAN (Thu Jun 30 2016 - 11:01:35 PDT)
[AMBER] Regarding run.rst file generation
- David A Case (Sun Jun 26 2016 - 10:42:50 PDT)
- Vishal Nemaysh (Sun Jun 26 2016 - 07:10:59 PDT)
[AMBER] Reminder: Training and Innovation Course in Drug Design
- Thomas Exner (Tue Jun 14 2016 - 23:59:22 PDT)
[AMBER] Replacing water with a H2O2 and restart the simulation
- Bill Ross (Thu Jun 02 2016 - 15:02:45 PDT)
- Morteza Chehel Amirani (Thu Jun 02 2016 - 13:37:09 PDT)
[AMBER] RESP charges
- FyD (Wed Jun 22 2016 - 23:08:44 PDT)
- amir sadeghi (Wed Jun 22 2016 - 11:53:14 PDT)
[AMBER] restarting a run
- Thomas Pochapsky (Tue Jun 07 2016 - 05:50:35 PDT)
- David A Case (Tue Jun 07 2016 - 01:04:10 PDT)
- Thomas Pochapsky (Mon Jun 06 2016 - 10:26:35 PDT)
- David A Case (Mon Jun 06 2016 - 10:06:33 PDT)
- Thomas Pochapsky (Mon Jun 06 2016 - 06:27:54 PDT)
[AMBER] RMSD for the backbone atoms of residues
- Daniel Roe (Fri Jun 10 2016 - 07:41:25 PDT)
- Dr. Anselm Horn (Fri Jun 10 2016 - 01:21:01 PDT)
- Hai Nguyen (Thu Jun 09 2016 - 12:47:42 PDT)
- Aishani Prem (Thu Jun 09 2016 - 12:40:50 PDT)
- Daniel Roe (Thu Jun 09 2016 - 12:33:14 PDT)
- Aishani Prem (Thu Jun 09 2016 - 12:31:46 PDT)
- Daniel Roe (Thu Jun 09 2016 - 12:17:43 PDT)
- Aishani Prem (Thu Jun 09 2016 - 12:14:32 PDT)
[AMBER] RMSD PLot
- Hai Nguyen (Wed Jun 29 2016 - 22:55:36 PDT)
- ankita mehta (Wed Jun 29 2016 - 21:27:52 PDT)
- Thiago Lipinski Paes (Wed Jun 29 2016 - 07:05:42 PDT)
- Gustavo Seabra (Wed Jun 29 2016 - 06:49:35 PDT)
- ankita mehta (Wed Jun 29 2016 - 02:22:14 PDT)
[AMBER] Running pmemd.MPI across the nodes
- Daniel Roe (Thu Jun 23 2016 - 07:17:42 PDT)
- Himanshu Joshi (Thu Jun 23 2016 - 04:30:35 PDT)
[AMBER] Saving the coordinates during a simulation
- Cruzeiro,Vinicius Wilian D (Mon Jun 20 2016 - 11:39:41 PDT)
- Daniel Roe (Mon Jun 20 2016 - 11:34:03 PDT)
- Aishani Prem (Mon Jun 20 2016 - 11:31:12 PDT)
[AMBER] script for calculation of dihedral angle frequency
- David A Case (Fri Jun 17 2016 - 04:47:52 PDT)
- Sehrish Naz Aijaz (Fri Jun 17 2016 - 00:36:14 PDT)
[AMBER] setMolecules failed
- Jason Swails (Tue Jun 07 2016 - 11:26:36 PDT)
- David A Case (Tue Jun 07 2016 - 10:04:46 PDT)
- Jason Swails (Tue Jun 07 2016 - 07:31:02 PDT)
- Damiano Spadoni (Tue Jun 07 2016 - 05:00:48 PDT)
- David A Case (Tue Jun 07 2016 - 01:14:34 PDT)
- Daniel Roe (Mon Jun 06 2016 - 13:04:27 PDT)
- Damiano Spadoni (Mon Jun 06 2016 - 13:01:52 PDT)
[AMBER] SHAKE Error
- David A Case (Mon Jun 27 2016 - 19:15:30 PDT)
- bharat gupta (Mon Jun 27 2016 - 17:41:38 PDT)
- David A Case (Fri Jun 24 2016 - 06:38:46 PDT)
- bharat gupta (Fri Jun 24 2016 - 03:42:55 PDT)
[AMBER] Slow performance of Amber12 on cluster
- Gustavo Seabra (Wed Jun 29 2016 - 06:57:01 PDT)
- bharat gupta (Wed Jun 29 2016 - 01:56:28 PDT)
[AMBER] solvent equilibration
- David A Case (Sun Jun 26 2016 - 10:38:00 PDT)
- Hector A. Baldoni (Sat Jun 25 2016 - 18:18:29 PDT)
- Bill Ross (Sat Jun 25 2016 - 06:08:52 PDT)
- Shilpa Gupta (Sat Jun 25 2016 - 06:03:57 PDT)
[AMBER] Some problems about Heme
- Pengfei Li (Tue Jun 07 2016 - 19:54:02 PDT)
- Lachele Foley (Mon Jun 06 2016 - 06:52:11 PDT)
- David A Case (Sat Jun 04 2016 - 21:26:51 PDT)
- Vaibhav Dixit (Sat Jun 04 2016 - 06:55:12 PDT)
- 163邮箱 (Sat Jun 04 2016 - 06:29:09 PDT)
- David A Case (Fri Jun 03 2016 - 13:33:57 PDT)
- Vaibhav Dixit (Fri Jun 03 2016 - 04:23:30 PDT)
- 163邮箱 (Fri Jun 03 2016 - 02:25:01 PDT)
[AMBER] Stripping waters from trajectory on a distance-based criteria
- Alessandro Contini (Wed Jun 22 2016 - 03:27:07 PDT)
- Daniel Roe (Tue Jun 21 2016 - 07:16:45 PDT)
- Alessandro Contini (Tue Jun 21 2016 - 02:27:25 PDT)
[AMBER] Structural refinement of the protein complexed with metalo-ions
- Pengfei Li (Thu Jun 30 2016 - 09:20:42 PDT)
- James Starlight (Thu Jun 30 2016 - 06:05:03 PDT)
- David A Case (Thu Jun 30 2016 - 05:13:03 PDT)
- James Starlight (Thu Jun 30 2016 - 03:44:47 PDT)
- James Starlight (Wed Jun 29 2016 - 07:39:21 PDT)
[AMBER] Structural refinement of the protein complexed withmetalo-ions
- zoran matovic (Thu Jun 30 2016 - 05:08:33 PDT)
[AMBER] test 4096wat
- Charles Lin (Sun Jun 05 2016 - 22:20:22 PDT)
- Charles Lin (Sun Jun 05 2016 - 22:19:00 PDT)
- mmaestre (Sun Jun 05 2016 - 22:16:35 PDT)
[AMBER] the meaning of NONBON in frcmod
- Zhenyu Meng (Thu Jun 30 2016 - 05:07:26 PDT)
- zoran matovic (Wed Jun 29 2016 - 04:12:08 PDT)
- Zhenyu Meng (Wed Jun 29 2016 - 02:30:55 PDT)
- David Cerutti (Wed Jun 29 2016 - 02:11:53 PDT)
- David Cerutti (Wed Jun 29 2016 - 02:11:06 PDT)
- Zhenyu Meng (Wed Jun 29 2016 - 01:34:36 PDT)
- David Cerutti (Tue Jun 28 2016 - 21:44:15 PDT)
- Zhenyu Meng (Tue Jun 28 2016 - 21:26:18 PDT)
[AMBER] Thermodynamic Integration with QM/MM Hamiltonian
- Dr. Andreas W. Goetz (Mon Jun 27 2016 - 14:08:14 PDT)
- Xiangyu Jia (Mon Jun 27 2016 - 07:07:00 PDT)
- David A Case (Mon Jun 27 2016 - 05:07:18 PDT)
- Xiangyu Jia (Mon Jun 27 2016 - 00:07:30 PDT)
[AMBER] THF parametrization
- Norbert GARNIER (Thu Jun 09 2016 - 05:39:54 PDT)
[AMBER] TI calculation with ligand dimer
- Hu, Yuan (Mon Jun 06 2016 - 07:33:59 PDT)
- Hannes Loeffler (Sat Jun 04 2016 - 03:01:16 PDT)
- Hu, Yuan (Fri Jun 03 2016 - 15:39:31 PDT)
[AMBER] TIP3PFBOX: water model
- Christina Bergonzo (Wed Jun 29 2016 - 07:21:51 PDT)
- Thakur, Abhishek (Wed Jun 29 2016 - 07:12:23 PDT)
- Shilpa Gupta (Wed Jun 29 2016 - 05:32:49 PDT)
[AMBER] Umbrella Sampling
- Carlos Simmerling (Wed Jun 08 2016 - 09:43:51 PDT)
- David Cerutti (Wed Jun 08 2016 - 09:30:19 PDT)
- Airy Sanjeev (Wed Jun 08 2016 - 09:15:58 PDT)
[AMBER] umbrella sampling long axex problem
- Airy Sanjeev (Mon Jun 13 2016 - 08:50:11 PDT)
[AMBER] umbrella sampling with two degrees of freedom
- Airy Sanjeev (Mon Jun 13 2016 - 05:06:29 PDT)
- Carlos Simmerling (Wed Jun 08 2016 - 04:27:04 PDT)
- David Cerutti (Tue Jun 07 2016 - 21:41:11 PDT)
- Feng Pan (Tue Jun 07 2016 - 21:34:58 PDT)
- Airy Sanjeev (Tue Jun 07 2016 - 21:16:50 PDT)
[AMBER] Une demande d'aide avec GAFF ( 2 )
- Chloe Renard (Mon Jun 20 2016 - 08:45:22 PDT)
- David A Case (Fri Jun 17 2016 - 04:50:50 PDT)
- Chloe Renard (Fri Jun 17 2016 - 01:36:44 PDT)
[AMBER] Unreadable rst7
- Jason Swails (Thu Jun 02 2016 - 06:33:46 PDT)
- Elisa Pieri (Thu Jun 02 2016 - 06:18:35 PDT)
- David A Case (Thu Jun 02 2016 - 06:16:34 PDT)
- Jason Swails (Thu Jun 02 2016 - 06:13:48 PDT)
- Elisa Pieri (Thu Jun 02 2016 - 04:02:46 PDT)
- Bill Ross (Thu Jun 02 2016 - 03:50:00 PDT)
- Bill Ross (Thu Jun 02 2016 - 03:20:16 PDT)
- Elisa Pieri (Thu Jun 02 2016 - 02:23:33 PDT)
- Bill Ross (Thu Jun 02 2016 - 02:17:22 PDT)
- Elisa Pieri (Thu Jun 02 2016 - 01:51:14 PDT)
[AMBER] Using Gromcas trajectories with CPPTRAJ
- Nhai (Wed Jun 29 2016 - 09:58:56 PDT)
- Daniel Roe (Wed Jun 29 2016 - 07:12:15 PDT)
- anu chandra (Wed Jun 29 2016 - 02:57:01 PDT)
[AMBER] Visualizing QM/MM Simulations
- Dr. Andreas W. Goetz (Tue Jun 14 2016 - 19:42:32 PDT)
- Nisler, Collin R. (Tue Jun 14 2016 - 19:26:07 PDT)
[AMBER] volmap: densities too low
- Jason Swails (Mon Jun 20 2016 - 08:48:25 PDT)
- Jean-Patrick Francoia (Mon Jun 20 2016 - 05:18:17 PDT)
- Jason Swails (Sat Jun 18 2016 - 04:33:04 PDT)
- Jean-Patrick Francoia (Sat Jun 18 2016 - 03:38:35 PDT)
[AMBER] Which of charge methods in antechamber are appropriate?
- Gustavo Seabra (Wed Jun 15 2016 - 11:32:55 PDT)
- Atila Petrosian (Wed Jun 15 2016 - 11:10:54 PDT)
Help me with double ambiguous noe.map files!!! PLEASE
- tanfei777.sina.cn (Mon Jun 13 2016 - 20:06:30 PDT)
- tanfei777.sina.cn (Sun Jun 12 2016 - 21:15:45 PDT)
MMPBSA.py issue with complex prmtop file
- Hai Nguyen (Wed Jun 01 2016 - 11:43:37 PDT)
- Hai Nguyen (Wed Jun 01 2016 - 11:40:57 PDT)
- Kalenkiewicz, Andrew (NIH/NICHD) [F] (Wed Jun 01 2016 - 11:34:44 PDT)

Amber Archive Jun 2016 by subject