Hello again Hai,
Yes, and you pointed the right direction. The versions given were 4.1, although my gcc was sourced to gcc44. I kept the obsolete version as well because Centos 5 can get iffy and sometimes you need the older compilers as well. I just moved gcc44, gfortran44, g++44 executables to gcc, gfortran, g++. Only then did the installer printed the versions as 4.4.7, and I managed to install the serial version without a problem in the end.
Thanks for all the help,
Alican
________________________________________
From: Hai Nguyen <nhai.qn.gmail.com>
Sent: Friday, June 3, 2016 1:25 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Amber16 won't install
Did you see this part
Obtaining the gnu compiler suite versions, e.g.:
gcc -v
The C version is 4.4.7
The Fortran version is 4.4.7
after doing "./configure gnu"?
Hai
On Fri, Jun 3, 2016 at 1:22 PM, Gulsevin,Alican <agulsevin.chem.ufl.edu>
wrote:
> Hello again,
>
> Sorry, the post I was referring to was : "> is_iostat_end is an F2003
> intrinsic function.
> > is_iostat_end is available in gnu 4.4.5, but not in 4.2.3: ", so 4.4.5
> was needed, and I have updated to 4.4.7. Still the same error.
>
> Alican
> ________________________________________
> From: Hai Nguyen <nhai.qn.gmail.com>
> Sent: Friday, June 3, 2016 1:11 PM
> To: AMBER Mailing List
> Subject: Re: [AMBER] Amber16 won't install
>
> Hi Gulsevin,
>
> I've tried to install amber16 with gcc *4.4.4 *and the compilation is ok
> with me.
>
> this is a part of my output from "./configure gnu"?
>
> Obtaining the gnu compiler suite versions, e.g.:
> gcc -v
> The C version is 4.4.4
> The Fortran version is 4.4.4
>
> Can you double-check your output with 4.4.5
>
> minor point: I think 4.5 (suggested from the thread you mention) > 4.4.5
> (yours)
>
> Hai
>
> On Fri, Jun 3, 2016 at 7:01 AM, Gulsevin,Alican <agulsevin.chem.ufl.edu>
> wrote:
>
> > Hi all,
> >
> > I've been trying to install Amber16 on 3 different machines at the moment
> > and all installations have failed so far due to different reasons. I'll
> be
> > posting only one for the moment for simplicity and try solving the rest
> in
> > the meantime, so I'd appreciate any help on the issue.
> >
> > OS of this computer is Centos 5.9, I tried installing Amber16 by first
> > running the configure file with gnu compiler for basic mode (no parallel
> or
> > GPU). After installing miniconda and the patch as the installer
> requested,
> > all was fine and I continued with the "make install" command. All was
> fine
> > until I hit the following error:
> >
> > gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC
> > -DNO_ALLOCATABLES_IN_TYPE -ffree-form -I../pbsa -I../sqm -I../rism
> > -I../../../include -I/home/progs/amber16/include
> > -I/home/progs/amber16/include -o qm2_extern_gau_module.o
> > qm2_extern_gau_module.F90
> > In file qm2_extern_gau_module.F90:357
> >
> > intrinsic :: is_iostat_end
> > 1
> > Error: Intrinsic at (1) does not exist
> > In file qm2_extern_gau_module.F90:476
> >
> > done = is_iostat_end(ios) .or. (i == 3)
> > 1
> > Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
> > In file qm2_extern_gau_module.F90:492
> >
> > done = done .or. is_iostat_end(ios)
> > 1
> > Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
> > make[2]: *** [qm2_extern_gau_module.o] Error 1
> > make[2]: Leaving directory `/home/progs/amber16/AmberTools/src/sander'
> > make[1]: *** [serial] Error 2
> > make[1]: Leaving directory `/home/progs/amber16/AmberTools/src'
> > make: *** [install] Error 2
> >
> > The past archives have one post related to the issue, where the problem
> > was told to be (possibly) about the gcc compiler version < 4.5. I updated
> > all gnu compilers before I begun (gcc, g++, gfortran), and my version
> info
> > shows 4.4.5 so that shouldn't be a problem, but things can go wrong in
> many
> > ways or the installation might be calling an obsolete version.
> >
> > Sorry if I skipped any information you might need, I'd be glad to answer
> > any further questions you might have. I appreciate your help.
> >
> > Thank you,
> > Alican
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 03 2016 - 11:00:02 PDT
