On Fri, Jun 3, 2016 at 1:11 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> Hi Gulsevin,
>
> I've tried to install amber16 with gcc *4.4.4 *and the compilation is ok
> with me.
>
>
I meant I tried with my available gcc verion (which is 4.4.4)
Hai
> this is a part of my output from "./configure gnu"?
>
> Obtaining the gnu compiler suite versions, e.g.:
> gcc -v
> The C version is 4.4.4
> The Fortran version is 4.4.4
>
> Can you double-check your output with 4.4.5
>
> minor point: I think 4.5 (suggested from the thread you mention) > 4.4.5
> (yours)
>
> Hai
>
> On Fri, Jun 3, 2016 at 7:01 AM, Gulsevin,Alican <agulsevin.chem.ufl.edu>
> wrote:
>
>> Hi all,
>>
>> I've been trying to install Amber16 on 3 different machines at the moment
>> and all installations have failed so far due to different reasons. I'll be
>> posting only one for the moment for simplicity and try solving the rest in
>> the meantime, so I'd appreciate any help on the issue.
>>
>> OS of this computer is Centos 5.9, I tried installing Amber16 by first
>> running the configure file with gnu compiler for basic mode (no parallel or
>> GPU). After installing miniconda and the patch as the installer requested,
>> all was fine and I continued with the "make install" command. All was fine
>> until I hit the following error:
>>
>> gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC
>> -DNO_ALLOCATABLES_IN_TYPE -ffree-form -I../pbsa -I../sqm -I../rism
>> -I../../../include -I/home/progs/amber16/include
>> -I/home/progs/amber16/include -o qm2_extern_gau_module.o
>> qm2_extern_gau_module.F90
>> In file qm2_extern_gau_module.F90:357
>>
>> intrinsic :: is_iostat_end
>> 1
>> Error: Intrinsic at (1) does not exist
>> In file qm2_extern_gau_module.F90:476
>>
>> done = is_iostat_end(ios) .or. (i == 3)
>> 1
>> Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
>> In file qm2_extern_gau_module.F90:492
>>
>> done = done .or. is_iostat_end(ios)
>> 1
>> Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
>> make[2]: *** [qm2_extern_gau_module.o] Error 1
>> make[2]: Leaving directory `/home/progs/amber16/AmberTools/src/sander'
>> make[1]: *** [serial] Error 2
>> make[1]: Leaving directory `/home/progs/amber16/AmberTools/src'
>> make: *** [install] Error 2
>>
>> The past archives have one post related to the issue, where the problem
>> was told to be (possibly) about the gcc compiler version < 4.5. I updated
>> all gnu compilers before I begun (gcc, g++, gfortran), and my version info
>> shows 4.4.5 so that shouldn't be a problem, but things can go wrong in many
>> ways or the installation might be calling an obsolete version.
>>
>> Sorry if I skipped any information you might need, I'd be glad to answer
>> any further questions you might have. I appreciate your help.
>>
>> Thank you,
>> Alican
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
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Received on Fri Jun 03 2016 - 10:30:03 PDT
