Hi Gulsevin,
I've tried to install amber16 with gcc *4.4.4 *and the compilation is ok
with me.
this is a part of my output from "./configure gnu"?
Obtaining the gnu compiler suite versions, e.g.:
gcc -v
The C version is 4.4.4
The Fortran version is 4.4.4
Can you double-check your output with 4.4.5
minor point: I think 4.5 (suggested from the thread you mention) > 4.4.5
(yours)
Hai
On Fri, Jun 3, 2016 at 7:01 AM, Gulsevin,Alican <agulsevin.chem.ufl.edu>
wrote:
> Hi all,
>
> I've been trying to install Amber16 on 3 different machines at the moment
> and all installations have failed so far due to different reasons. I'll be
> posting only one for the moment for simplicity and try solving the rest in
> the meantime, so I'd appreciate any help on the issue.
>
> OS of this computer is Centos 5.9, I tried installing Amber16 by first
> running the configure file with gnu compiler for basic mode (no parallel or
> GPU). After installing miniconda and the patch as the installer requested,
> all was fine and I continued with the "make install" command. All was fine
> until I hit the following error:
>
> gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC
> -DNO_ALLOCATABLES_IN_TYPE -ffree-form -I../pbsa -I../sqm -I../rism
> -I../../../include -I/home/progs/amber16/include
> -I/home/progs/amber16/include -o qm2_extern_gau_module.o
> qm2_extern_gau_module.F90
> In file qm2_extern_gau_module.F90:357
>
> intrinsic :: is_iostat_end
> 1
> Error: Intrinsic at (1) does not exist
> In file qm2_extern_gau_module.F90:476
>
> done = is_iostat_end(ios) .or. (i == 3)
> 1
> Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
> In file qm2_extern_gau_module.F90:492
>
> done = done .or. is_iostat_end(ios)
> 1
> Error: Function 'is_iostat_end' at (1) has no IMPLICIT type
> make[2]: *** [qm2_extern_gau_module.o] Error 1
> make[2]: Leaving directory `/home/progs/amber16/AmberTools/src/sander'
> make[1]: *** [serial] Error 2
> make[1]: Leaving directory `/home/progs/amber16/AmberTools/src'
> make: *** [install] Error 2
>
> The past archives have one post related to the issue, where the problem
> was told to be (possibly) about the gcc compiler version < 4.5. I updated
> all gnu compilers before I begun (gcc, g++, gfortran), and my version info
> shows 4.4.5 so that shouldn't be a problem, but things can go wrong in many
> ways or the installation might be calling an obsolete version.
>
> Sorry if I skipped any information you might need, I'd be glad to answer
> any further questions you might have. I appreciate your help.
>
> Thank you,
> Alican
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>
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Received on Fri Jun 03 2016 - 10:30:02 PDT
