Adding to Dan comment:
You can use a pdb file for topology if you dont want to generate amber parm7 file
parm my.pdb
trajin my.trr
hbond ....
Hai
> On Jun 29, 2016, at 10:12 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
> CPPTRAJ will read .trr trajectory files.
>
> -Dan
>
>> On Wednesday, June 29, 2016, anu chandra <anu80125.gmail.com> wrote:
>>
>> Dear Amber users,
>>
>> I have done a 100 ns long simulation using Gromacs. I just wonder if there
>> is a way to the Gromacs trajectory files ( .xtc or .trr) in CPPTRAJ for
>> doing some trajectory analysis.
>>
>> Many thanks
>> Anu
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>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 307
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
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Received on Wed Jun 29 2016 - 10:00:05 PDT
