Hi, I get the following error while compiling ambertools16 on a Fedora 24
OS:
installing ./reduce_src...
make[3]: Entering directory
'/usr/local/amber16/AmberTools/src/reduce/reduce_src'
g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED
-DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX
-DINCTEMPLATEDEFNS
-DHET_DICTIONARY='"/usr/local/amber16/dat/reduce_wwPDB_het_dict.txt"'
-I../libpdb -I../toolclasses -o GraphToHoldScores.o GraphToHoldScores.cpp
GraphToHoldScores.cpp: In member function ‘int
DegreeTwoEdge_ths::whichVertex(int) const’:
GraphToHoldScores.cpp:1152:88: error: no match for ‘operator<<’ (operand
types are ‘std::basic_ostream<char>’ and ‘std::ostream {aka
std::basic_ostream<char>}’)
std::cerr << "CRITICAL ERROR IN whichVertex(" << vertex_index << ")
called on edge [" <<
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
std::cerr << vertex_indices_[ 0 ] << ", " << vertex_indices_[ 1 ] << "]"
<< std::endl;
~~~
In file included from /usr/include/c++/6.1.1/iostream:39:0,
from ../toolclasses/Point3d.h:19,
from AtomDescr.h:10,
from GraphToHoldScores.h:11,
from GraphToHoldScores.cpp:1:
/usr/include/c++/6.1.1/ostream:628:5: note: candidate:
std::basic_ostream<_CharT, _Traits>&
std::operator<<(std::basic_ostream<_CharT, _Traits>&&, const _Tp&) [with
_CharT = char; _Traits = std::char_traits<char>; _Tp =
std::basic_ostream<char>] <near match>
operator<<(basic_ostream<_CharT, _Traits>&& __os, const _Tp& __x)
^~~~~~~~
/usr/include/c++/6.1.1/ostream:628:5: note: conversion of argument 1
would be ill-formed:
GraphToHoldScores.cpp:1152:64: error: cannot bind
‘std::basic_ostream<char>’ lvalue to ‘std::basic_ostream<char>&&’
std::cerr << "CRITICAL ERROR IN whichVertex(" << vertex_index << ")
called on edge [" <<
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
GraphToHoldScores.cpp:1152:88: note: candidate: operator<<(int, int)
<built-in>
std::cerr << "CRITICAL ERROR IN whichVertex(" << vertex_index << ")
called on edge [" <<
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
std::cerr << vertex_indices_[ 0 ] << ", " << vertex_indices_[ 1 ] << "]"
<< std::endl;
~~~
GraphToHoldScores.cpp:1152:88: note: no known conversion for argument 2
from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘int’
In file included from /usr/include/c++/6.1.1/iostream:39:0,
from ../toolclasses/Point3d.h:19,
from AtomDescr.h:10,
from GraphToHoldScores.h:11,
from GraphToHoldScores.cpp:1:
.....
chunked output
.....
Makefile:33: recipe for target 'GraphToHoldScores.o' failed
make[3]: *** [GraphToHoldScores.o] Error 1
make[3]: Leaving directory
'/usr/local/amber16/AmberTools/src/reduce/reduce_src'
Makefile:19: recipe for target 'install' failed
make[2]: *** [install] Error 2
make[2]: Leaving directory '/usr/local/amber16/AmberTools/src/reduce'
Makefile:17: recipe for target 'serial' failed
make[1]: *** [serial] Error 2
make[1]: Leaving directory '/usr/local/amber16/AmberTools/src'
Makefile:7: recipe for target 'install' failed
make: *** [install] Error 2
I found an old post "
http://archive.ambermd.org/200903/0267.html"
suggesting to overcome this error by skipping reduce compiling.
Fedora 24 is updated and GNU tools "gcc*" installed.
I'm wondering how to solve any of both issues: compiling with reduce and/or
skipping compiling it.
Hope you can help me.
Thanks in advance.
--
Esteban Gabriel Vega Hissi
Área de Química Física
Departamento de Química
Universidad Nacional de San Luis
Argentina
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Received on Wed Jun 29 2016 - 11:00:02 PDT
