[AMBER] Error while trying to upgrade AmberTools 15

From: Nikolay N. Kuzmich <nnkuzmich.gmail.com>
Date: Wed, 8 Jun 2016 12:48:28 +0300

Dear Amber users,

I launched the update_amber script
and the upgrade process presumably wasn't successful:

nikolay/amber14% $AMBERHOME/update_amber --update
Preparing to apply updates... please wait.
Traceback (most recent call last):
  File "/home/nikolay/amber14/update_amber", line 23, in <module>
    app.mainloop()
  File "/home/nikolay/amber14/updateutils/main.py", line 489, in mainloop
    self.update()
  File "/home/nikolay/amber14/updateutils/main.py", line 43, in newfcn
    fcn(self, *args, **kwargs)
  File "/home/nikolay/amber14/updateutils/main.py", line 317, in update
    self._update_ambertools()
  File "/home/nikolay/amber14/updateutils/main.py", line 43, in newfcn
    fcn(self, *args, **kwargs)
  File "/home/nikolay/amber14/updateutils/main.py", line 212, in
_update_ambertools
    last)
  File "/home/nikolay/amber14/updateutils/main.py", line 43, in newfcn
    fcn(self, *args, **kwargs)
  File "/home/nikolay/amber14/updateutils/main.py", line 187, in
_update_tree
    last = remote.last()
  File "/home/nikolay/amber14/updateutils/repos.py", line 289, in last
    self.fill_list()
  File "/home/nikolay/amber14/updateutils/downloader.py", line 104, in
new_fcn
    return fcn(*args, **kwargs)
  File "/home/nikolay/amber14/updateutils/repos.py", line 204, in fill_list
    p = urlopen(url)
  File "/usr/lib64/python2.7/urllib2.py", line 127, in
urlopen

    return _opener.open(url, data,
timeout)

  File "/usr/lib64/python2.7/urllib2.py", line 410, in
open

    response = meth(req,
response)

  File "/usr/lib64/python2.7/urllib2.py", line 523, in
http_response

    'http', request, response, code, msg,
hdrs)

  File "/usr/lib64/python2.7/urllib2.py", line 442, in
error

    result =
self._call_chain(*args)

  File "/usr/lib64/python2.7/urllib2.py", line 382, in
_call_chain

    result =
func(*args)

  File "/usr/lib64/python2.7/urllib2.py", line 629, in
http_error_302

    return self.parent.open(new,
timeout=req.timeout)

  File "/usr/lib64/python2.7/urllib2.py", line 404, in
open

    response = self._open(req,
data)

  File "/usr/lib64/python2.7/urllib2.py", line 422, in
_open

    '_open', req)
  File "/usr/lib64/python2.7/urllib2.py", line 382, in _call_chain
    result = func(*args)
  File "/usr/lib64/python2.7/urllib2.py", line 1214, in http_open
    return self.do_open(httplib.HTTPConnection, req)
  File "/usr/lib64/python2.7/urllib2.py", line 1187, in do_open
    r = h.getresponse(buffering=True)
  File "/usr/lib64/python2.7/httplib.py", line 1067, in getresponse
    response.begin()
  File "/usr/lib64/python2.7/httplib.py", line 409, in begin
    version, status, reason = self._read_status()
  File "/usr/lib64/python2.7/httplib.py", line 365, in _read_status
    line = self.fp.readline(_MAXLINE + 1)
  File "/usr/lib64/python2.7/socket.py", line 476, in readline
    data = self._sock.recv(self._rbufsize)
socket.timeout: timed out
nikolay/amber14%

Could you please give me an advice how to fix it?
Thank you in advance.

Kind regards,
Nick
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Received on Wed Jun 08 2016 - 03:00:03 PDT
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