[AMBER] Error: [cluster] Not all arguments handled: [ pdb ]

From: Thakur, Abhishek <axt651.miami.edu>
Date: Tue, 28 Jun 2016 20:59:18 +0000

Hi

I am trying to run cpptraj for cluster analysis

Script that I am following is



trajin Apo_aMD_100_300ns.crd.gz
cluster out testcluster representative pdb \
avgout MyAvg.pdb avgfmt pdb \
averagelinkage clusters 10 rms .CA sieve 10

But all the time I am getting an error


Error: [cluster] Not all arguments handled: [ pdb ]


But when I am running same script by removing pdb

trajin PRMT7_Apo_aMD_100_300ns.crd.gz
cluster out testcluster representative \
avgout MyAvg.pdb avgfmt \
averagelinkage clusters 10 rms .CA sieve 10


it seems to be running.

I want to know that I am on correct path or not?


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Received on Tue Jun 28 2016 - 14:00:02 PDT
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