Re: [AMBER] convert mol2 to pdb

From: Gerald Monard <Gerald.Monard.univ-lorraine.fr>
Date: Wed, 29 Jun 2016 17:08:39 +0200

Hi,

You can use antechamber:
antechamber -i myfile.mol -fi mol2 -o myfile.pdb -fo pdb

Gerald.

On 06/29/2016 05:04 PM, Martina Devi wrote:
> Thankyou. May I know other tools available?
>
> Martina
>
>
> On Wed, Jun 29, 2016 at 8:32 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
>> There are many tools in AmberTools can do that. But you can just use
>> cpptraj.
>>
>> parm my.mol2
>> trajin my.mol2
>> trajout my.pdb
>>
>> You can also you cpptraj command line, check 'cpptraj --help' and its
>> manual for further info
>>
>> Hai
>>
>> On Wed, Jun 29, 2016 at 10:57 AM, Martina Devi <martinadevi2011.gmail.com>
>> wrote:
>>
>>> Dear AmberUsers
>>>
>>> How do I convert mol2 to pdb?
>>>
>>> Regards
>>> Martina
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-- 
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  Prof. Gerald MONARD
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  e-mail : Gerald.Monard.univ-lorraine.fr
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Received on Wed Jun 29 2016 - 08:30:05 PDT
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