Please see my reply below.
On Tue, Jun 14, 2016 at 10:06 PM, Abdul-Rashid Iii Sampaco <
absampaco.up.edu.ph> wrote:
> Thank you for all your responses.
>
> I tried Case's suggestion. I understand the command forces the computer to
> download Miniconda. However, it fails to connect. The error message is:
>
> Connecting to repo.continuum.io (repo.continuum.io)|54.225.73.227|:443...
> failed: Connection timed out
>
> I'm not sure if this is already a problem on my internet connection, or how
> my terminal connects to the internet. I opened the link manually on the
> browser and downloaded the shell file. I then used ./configure
> --with-python /path/to/miniconda.sh but it cannot be run by the terminal. I
> understand now that the shell file cannot be run on the terminal. Any
> suggestions on how to run it?
>
> Btw, I also tried Nguyen's suggestion, but it does not work. It says it
> cannot find the file.
>
>
Can you send the output of this
*ls $AMBERHOME/lib/*
> To Chagas, I don't know exactly what you mean by "Try to copy your content
> and put it in the .profile file". Which content? I'm not an experienced
> Linux user. I'm sorry if you have to be very specific on your instructions
> to me.
>
> Sincerely,
>
> Rashid
>
> On Tue, Jun 14, 2016 at 10:25 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
> > Hi
> >
> > First, do you see any folder in $AMBERHOME/lib/python*X.Y*/site-packages?
> > where "X.Y" can be *2.7, 3.4, 3.5* (you should expect to see parmed,
> > sander, pytraj, ...)
> >
> > If yes, do this again in your terminal
> >
> > source /home/absampaco/amber16//amber.sh
> >
> > If nothing works, please try Case's suggestion.
> >
> > Hai
> >
> > On Tue, Jun 14, 2016 at 4:22 AM, Abdul-Rashid Iii Sampaco <
> > absampaco.up.edu.ph> wrote:
> >
> > > Hi,
> > >
> > > I am installing AmberTools16 on my laptop using Ubuntu BioLinux on VM.
> I
> > > followed all instructions on the guide. Based on what I see, everything
> > > works perfectly well after make install. However, the 'make test' gives
> > > this error message:
> > >
> > > Error: Could not import Amber Python modules! Probably your Amber
> Python
> > > environment was not set up correctly.
> > >
> > > I already added the test -f /home/absampaco/amber16//amber.sh && source
> > > /home/absampaco/amber16//amber.sh to my ~/.bash.rc before the 'make
> > > install'.
> > >
> > > I would appreciate any help given.
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> > >
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> >
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Received on Tue Jun 14 2016 - 20:00:02 PDT
