Thank you for all your responses.
I tried Case's suggestion. I understand the command forces the computer to
download Miniconda. However, it fails to connect. The error message is:
Connecting to repo.continuum.io (repo.continuum.io)|54.225.73.227|:443...
failed: Connection timed out
I'm not sure if this is already a problem on my internet connection, or how
my terminal connects to the internet. I opened the link manually on the
browser and downloaded the shell file. I then used ./configure
--with-python /path/to/miniconda.sh but it cannot be run by the terminal. I
understand now that the shell file cannot be run on the terminal. Any
suggestions on how to run it?
Btw, I also tried Nguyen's suggestion, but it does not work. It says it
cannot find the file.
To Chagas, I don't know exactly what you mean by "Try to copy your content
and put it in the .profile file". Which content? I'm not an experienced
Linux user. I'm sorry if you have to be very specific on your instructions
to me.
Sincerely,
Rashid
On Tue, Jun 14, 2016 at 10:25 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> Hi
>
> First, do you see any folder in $AMBERHOME/lib/python*X.Y*/site-packages?
> where "X.Y" can be *2.7, 3.4, 3.5* (you should expect to see parmed,
> sander, pytraj, ...)
>
> If yes, do this again in your terminal
>
> source /home/absampaco/amber16//amber.sh
>
> If nothing works, please try Case's suggestion.
>
> Hai
>
> On Tue, Jun 14, 2016 at 4:22 AM, Abdul-Rashid Iii Sampaco <
> absampaco.up.edu.ph> wrote:
>
> > Hi,
> >
> > I am installing AmberTools16 on my laptop using Ubuntu BioLinux on VM. I
> > followed all instructions on the guide. Based on what I see, everything
> > works perfectly well after make install. However, the 'make test' gives
> > this error message:
> >
> > Error: Could not import Amber Python modules! Probably your Amber Python
> > environment was not set up correctly.
> >
> > I already added the test -f /home/absampaco/amber16//amber.sh && source
> > /home/absampaco/amber16//amber.sh to my ~/.bash.rc before the 'make
> > install'.
> >
> > I would appreciate any help given.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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>
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Received on Tue Jun 14 2016 - 19:30:02 PDT
