I suspect you are not sourcing the amber.sh (bash) or amber.csh
(c-shell) scripts. It is no longer enough to just set AMBERHOME. Make
sure you are sourcing the appropriate script prior to running any
commands.
-Dan
On Wed, Jun 1, 2016 at 4:55 PM, Angelina Malagodi
<angelinamalagodi.gmail.com> wrote:
> To whom this may concern:
>
> I have downloaded all necessary programs to run Ambertools successfully on
> my computer; however, every time I restart or close down my terminal the
> cpptraj command does not work. Additionally, by looking at vim .bashrc I
> can see that Amberhome is correctly defined. The only way I have managed to
> get cpptraj to work is to reinstall everything every time I restart my
> computer. This is rather cumbersome and I would very much appreciate the
> help.
>
> Sincerely,
>
> Angelina Malagodi
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Wed Jun 01 2016 - 16:30:03 PDT
