I am very grateful to everybody for your suggestions.
Regards
Martina
On Wed, Jun 29, 2016 at 8:45 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> in addition to antechamber Gerald just listed, there are also ambpdb,
> and ParmEd, pytraj.
>
> Hai
>
> On Wed, Jun 29, 2016 at 11:04 AM, Martina Devi <martinadevi2011.gmail.com>
> wrote:
>
> > Thankyou. May I know other tools available?
> >
> > Martina
> >
> >
> > On Wed, Jun 29, 2016 at 8:32 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> >
> > > There are many tools in AmberTools can do that. But you can just use
> > > cpptraj.
> > >
> > > parm my.mol2
> > > trajin my.mol2
> > > trajout my.pdb
> > >
> > > You can also you cpptraj command line, check 'cpptraj --help' and its
> > > manual for further info
> > >
> > > Hai
> > >
> > > On Wed, Jun 29, 2016 at 10:57 AM, Martina Devi <
> > martinadevi2011.gmail.com>
> > > wrote:
> > >
> > > > Dear AmberUsers
> > > >
> > > > How do I convert mol2 to pdb?
> > > >
> > > > Regards
> > > > Martina
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Received on Wed Jun 29 2016 - 08:30:07 PDT
