Martina,
> I am very grateful to everybody for your suggestions.
I did not see this answer: my feeling is that you HAVE to install a
file format converter on your machine: i. e. openbabel
http://openbabel.org/wiki/Main_Page.
babel -imol2 xxxx.mol2 -opdb xxxx.pdb
I think this is difficult to be more simple...
regards, Francois
> On Wed, Jun 29, 2016 at 8:45 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
>> in addition to antechamber Gerald just listed, there are also ambpdb,
>> and ParmEd, pytraj.
>>
>> Hai
>>
>> On Wed, Jun 29, 2016 at 11:04 AM, Martina Devi <martinadevi2011.gmail.com>
>> wrote:
>>
>> > Thankyou. May I know other tools available?
>> >
>> > Martina
>> >
>> >
>> > On Wed, Jun 29, 2016 at 8:32 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>> >
>> > > There are many tools in AmberTools can do that. But you can just use
>> > > cpptraj.
>> > >
>> > > parm my.mol2
>> > > trajin my.mol2
>> > > trajout my.pdb
>> > >
>> > > You can also you cpptraj command line, check 'cpptraj --help' and its
>> > > manual for further info
>> > >
>> > > Hai
>> > >
>> > > On Wed, Jun 29, 2016 at 10:57 AM, Martina Devi <
>> > martinadevi2011.gmail.com>
>> > > wrote:
>> > >
>> > > > Dear AmberUsers
>> > > >
>> > > > How do I convert mol2 to pdb?
>> > > >
>> > > > Regards
>> > > > Martina
F.-Y. Dupradeau
---
http://q4md-forcefieldtools.org/FyD/
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Received on Wed Jun 29 2016 - 23:30:03 PDT
