[AMBER] Library errors while using NAB on Amber16

From: Slava Chushak <chushak.yahoo.com>
Date: Wed, 29 Jun 2016 19:01:04 +0000 (UTC)

Hi,

I'm trying to build a single stranded DNA molecule using link_na function in NAB.
Here is a nab script:

molecule m;
string seq;
seq = "ATGGCCAATG";
m = link_na("1", seq, "", "DNA", "35");
putpdb( "DNA.pdb", m );

Got an error message "Residue T not in library nab10.lib."
OK, I changed to the library "dna.amberua.rlb".
Got another error message "Residue A5 not in library dna.amberua.rlb."
Any suggestions how to fix a problem.

Thank you.
Slava Chushak

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Received on Wed Jun 29 2016 - 12:30:04 PDT
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