[AMBER] umbrella sampling with two degrees of freedom

From: Airy Sanjeev <airy.sanjeev01.gmail.com>
Date: Mon, 13 Jun 2016 17:36:29 +0530

We have studied the dimerisation of two monomeric units using PMF. We
 used distance between the two monomers in the dimer as one of the
restraint in carrying out the umbrella sampling. We are now interested
to keep the angle between the long axes of two protein chains of
monomers as another degree of freedom. How to do this? 

-- 
with best regards,
Airy Sanjeev
Research Scholar
Dept. of MBBT
Tezpur University
Napaam,Tezpur-784028
Sonitpur,Assam
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Received on Mon Jun 13 2016 - 05:30:02 PDT
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