You can specify start and stop frames to the 'trajin' command, e.g. "trajin
1 1000" to process only the first 1000 frames, etc.
-Dan
On Monday, June 13, 2016, Angelina Malagodi <angelinamalagodi.gmail.com>
wrote:
> Okay, but is there a way to compare my first 10 nano seconds to say my last
> 90ns without separating my trajectories into segments?
>
> On Mon, Jun 13, 2016 at 11:44 AM, Daniel Roe <daniel.r.roe.gmail.com
> <javascript:;>> wrote:
>
> > If you processed 1000 frames, the RDF that is output is calculated
> > from all 1000 frames.
> >
> > -Dan
> >
> > On Mon, Jun 13, 2016 at 11:38 AM, Angelina Malagodi
> > <angelinamalagodi.gmail.com <javascript:;>> wrote:
> > > To whom this may concern:
> > >
> > > I have been doing radial distribution functions using a 1000 frame
> > > trajectory. My results don't indicate if the results are a average over
> > all
> > > of the frames or a single frame. Thank you so much!
> > >
> > > Sincerely,
> > >
> > > Angelina Malagodi
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org <javascript:;>
> > > http://lists.ambermd.org/mailman/listinfo/amber
> >
> >
> >
> > --
> > -------------------------
> > Daniel R. Roe, PhD
> > Department of Medicinal Chemistry
> > University of Utah
> > 30 South 2000 East, Room 307
> > Salt Lake City, UT 84112-5820
> > http://home.chpc.utah.edu/~cheatham/
> > (801) 587-9652
> > (801) 585-6208 (Fax)
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org <javascript:;>
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org <javascript:;>
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Mon Jun 13 2016 - 11:30:02 PDT
