Can the syntax be read as is? When I tried I received this error:
trajin 1 1000
Error: '1': No such file or directory
Error: Could not set up input trajectory '1'.
On Mon, Jun 13, 2016 at 12:02 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> You can specify start and stop frames to the 'trajin' command, e.g. "trajin
> 1 1000" to process only the first 1000 frames, etc.
>
> -Dan
>
> On Monday, June 13, 2016, Angelina Malagodi <angelinamalagodi.gmail.com>
> wrote:
>
> > Okay, but is there a way to compare my first 10 nano seconds to say my
> last
> > 90ns without separating my trajectories into segments?
> >
> > On Mon, Jun 13, 2016 at 11:44 AM, Daniel Roe <daniel.r.roe.gmail.com
> > <javascript:;>> wrote:
> >
> > > If you processed 1000 frames, the RDF that is output is calculated
> > > from all 1000 frames.
> > >
> > > -Dan
> > >
> > > On Mon, Jun 13, 2016 at 11:38 AM, Angelina Malagodi
> > > <angelinamalagodi.gmail.com <javascript:;>> wrote:
> > > > To whom this may concern:
> > > >
> > > > I have been doing radial distribution functions using a 1000 frame
> > > > trajectory. My results don't indicate if the results are a average
> over
> > > all
> > > > of the frames or a single frame. Thank you so much!
> > > >
> > > > Sincerely,
> > > >
> > > > Angelina Malagodi
> > > > _______________________________________________
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> > >
> > >
> > >
> > > --
> > > -------------------------
> > > Daniel R. Roe, PhD
> > > Department of Medicinal Chemistry
> > > University of Utah
> > > 30 South 2000 East, Room 307
> > > Salt Lake City, UT 84112-5820
> > > http://home.chpc.utah.edu/~cheatham/
> > > (801) 587-9652
> > > (801) 585-6208 (Fax)
> > >
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>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 307
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Jun 13 2016 - 12:00:02 PDT
