Can you please post your entire cpptraj output? Also, what version of
cpptraj are you using?
-Dan
On Thu, Jun 9, 2016 at 1:14 PM, Aishani Prem <aishaniprem.gmail.com> wrote:
> Hi,
> I am trying to get the RMSD of the backbone atoms for a specific set
> of residues in my simulations. My input file looks like:
> trajin pdb_nocut.mdcrd
> reference pdb_nocut.rst
> autoimage
> rms reference mass out pdb_backbone_nocut_cpptraj.rms .N,CA,C,O :76-112
> time 0.1
>
> When I run this , I dont get any error but my output file is not generated
> either. Am I doing anything wrong?
> --
> Thank You and Regards,
> Aishani Chittoor Prem
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu Jun 09 2016 - 12:30:02 PDT
