[AMBER] convert mol2 to prepin

From: Martina Devi <martinadevi2011.gmail.com>
Date: Tue, 28 Jun 2016 22:10:39 +0530

Dear Amber Users

I gave the following command to convert mol2 file to prepin

OAU=loadmol2 OAU.mol2
saveamberprep OAU OAU.prep

then I got the following lines:

OAU: connect0 not defined
OAU: connect1 not defined
-- Remember to delete improper terms!

Do I have to edit the mol2 file and how do I define connect? I am attaching
the mol2 file.

Waiting for help in anticipation.

Thanks in advance
Martina


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

Received on Tue Jun 28 2016 - 10:00:04 PDT