Re: [AMBER] RMSD PLot

From: Thiago Lipinski Paes <thiagopaes.gmail.com>
Date: Wed, 29 Jun 2016 11:05:42 -0300

Another way is:

Replacing your line with
*"trajin trajectprod.mdcrd 300 last 1" *I considered that you have 1
snapshot each 1 ps, so I started from snapshot 300. You will need to do the
math for your case. But I think that this way your plots Xaxis will be
from 0 to (last - 300).

--
Thiago Lipinski Paes
On Wed, Jun 29, 2016 at 10:49 AM, Gustavo Seabra <gustavo.seabra.gmail.com>
wrote:
> Just delete de “n” first lines of the “rmsdcal10.dat” file.
>
> —
> Gustavo Seabra.
>
>
>
> > Em 29 de jun de 2016, à(s) 06:22, ankita mehta <mehtaroadies.gmail.com>
> escreveu:
> >
> > Dear all,
> > I have a query in cpptraj when we are plotting graph of RMSD versus time
> Is
> > it possible that we get these graphs not starting from 0 time but after a
> > specific time .....say from 300 ps ..
> > commands:
> > parm model3.prmtop
> > reference model3r25more.rst
> > trajin trajectprod.mdcrd
> > rmsd BB :1-390.C,CA,N ref model3r25more.rst out rmsdcal10.dat time 10
> > go
> > _______________________________________________
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> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
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Received on Wed Jun 29 2016 - 07:30:02 PDT