[AMBER] re imaging doubt

From: Mary Varughese <maryvj1985.gmail.com>
Date: Fri, 3 Jun 2016 16:28:20 +0530

Sir,

I have used iwrap=1 for a simulation. Is the re-imaging commands below ok?
I want to use ptraj; (autoimage is for cpptraj. isnt?). a dsDNA and ligand.

center :1-20 mass origin
image origin center familiar
center :1-40 mass origin
image origin center familiar
center :1-41 mass origin
image origin center familiar

Is this correct.

If i didnt use iwrap=1; then re-imaging is not necessary. Isnt?



Thanking you

mary
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 03 2016 - 04:00:02 PDT
Custom Search