On Fri, Jun 17, 2016, Sehrish Naz Aijaz wrote:
>
> I have done protein-protein simulation by amber12 and calculated the
> dihedral angles to measure the conformational changes in one of the
> protein. Now I want to calculate the frequency of those dihedral angles
> but I am unable to find its script.
It's not at all clear what you mean by the phrase "the frequency of those
dihedral angles". In most cases, you will want to examine visually a plot of
dihedral angle vs time, perhaps using that to identify interesting regions of
the trajectory where the conformation change is taking place.
....dac
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Received on Fri Jun 17 2016 - 05:00:02 PDT
