Amber Archive Feb 2015: by subject

[AMBER] (无主题)
- chemjxn.126.com (Sun Feb 01 2015 - 22:58:20 PST)
[AMBER] [MGMS-DS]: Molecular Modelling Workshop March 9-11, 2015 in Erlangen, Germany
- Harald Lanig (Tue Feb 17 2015 - 06:10:03 PST)
[AMBER] A tool to analyze amberesults
- Jason Swails (Sun Feb 22 2015 - 06:58:39 PST)
- Valentina Romano (Sun Feb 22 2015 - 06:56:15 PST)
[AMBER] ACS COMP Division awards for Fall 2015 National Meeting in Boston
- Carlos Simmerling (Thu Feb 05 2015 - 08:55:09 PST)
[AMBER] alkynes in GAFF
- Rebeca García Fandiño (Thu Feb 12 2015 - 13:51:40 PST)
- Rebeca García Fandiño (Thu Feb 12 2015 - 04:56:46 PST)
- David A Case (Thu Feb 12 2015 - 04:27:32 PST)
- Rebeca García Fandiño (Thu Feb 12 2015 - 01:42:06 PST)
[AMBER] amber14 hangs on Python datetime module
- Jason Swails (Sun Feb 15 2015 - 13:28:50 PST)
- Robert Wohlhueter (Sun Feb 15 2015 - 12:36:53 PST)
- Robert Wohlhueter (Sun Feb 15 2015 - 12:34:05 PST)
- Robert Wohlhueter (Sun Feb 15 2015 - 12:13:12 PST)
- Novosielski, Ryan (Sun Feb 15 2015 - 11:53:24 PST)
- Robert Wohlhueter (Sun Feb 15 2015 - 11:06:55 PST)
[AMBER] Amber14 hardware setup
- Jason Swails (Wed Feb 04 2015 - 05:30:00 PST)
- Sofia Vasilakaki (Wed Feb 04 2015 - 04:59:49 PST)
[AMBER] AMBER: MPI run issue
- Jason Swails (Mon Feb 16 2015 - 06:15:05 PST)
- Bajarang Kumbhar (Mon Feb 16 2015 - 05:38:31 PST)
[AMBER] AmberTools14 installation
- Jason Swails (Mon Feb 02 2015 - 11:44:36 PST)
- Dhiraj Srivastava (Mon Feb 02 2015 - 11:38:48 PST)
- Dhiraj Srivastava (Mon Feb 02 2015 - 11:37:36 PST)
- Novosielski, Ryan (Mon Feb 02 2015 - 11:30:09 PST)
- Dhiraj Srivastava (Mon Feb 02 2015 - 11:25:25 PST)
[AMBER] aMD and scaled MD in amber 14
- Neha Gandhi (Thu Feb 12 2015 - 04:59:24 PST)
[AMBER] AMD stuck with v-limit exceeded error
- Daniel Roe (Sun Feb 01 2015 - 11:38:20 PST)
- Hadeer ELHabashy (Sun Feb 01 2015 - 02:56:00 PST)
[AMBER] An Amber Lipid Force Field Tutorial: problem with shell script
- David A Case (Thu Feb 26 2015 - 05:02:13 PST)
- Chris Gaughan (Wed Feb 25 2015 - 20:02:58 PST)
[AMBER] Analysis of the MMGBSA decomposition output
- Jason Swails (Fri Feb 06 2015 - 17:28:31 PST)
- Kenneth Huang (Fri Feb 06 2015 - 14:49:22 PST)
- James Starlight (Fri Feb 06 2015 - 10:14:39 PST)
- James Starlight (Fri Feb 06 2015 - 01:07:44 PST)
- Kenneth Huang (Thu Feb 05 2015 - 10:52:52 PST)
- James Starlight (Tue Feb 03 2015 - 06:34:44 PST)
[AMBER] angles values in GAFF for alkynes
- hannes.loeffler.stfc.ac.uk (Fri Feb 13 2015 - 11:28:49 PST)
- Rebeca García Fandiño (Fri Feb 13 2015 - 10:47:39 PST)
- hannes.loeffler.stfc.ac.uk (Fri Feb 13 2015 - 10:40:35 PST)
- Rebeca García Fandiño (Fri Feb 13 2015 - 10:19:12 PST)
[AMBER] Announcement: "Hands-On" Workshop on Computational Biophysics in Urbana, IL (April 6-10, 2015)
- Jodi Ann Hadden (Mon Feb 16 2015 - 13:41:55 PST)
[AMBER] Announcement: Release of DOCK 6.7
- Scott Brozell (Thu Feb 12 2015 - 16:27:51 PST)
[AMBER] Announcement: release of FESetup 1.1
- Hannes Loeffler (Tue Feb 24 2015 - 07:48:25 PST)
[AMBER] ante-MMPBSA IndexError: list index out of range
- Jason Swails (Tue Feb 03 2015 - 12:23:53 PST)
- Kenneth Huang (Tue Feb 03 2015 - 10:30:55 PST)
- Jason Swails (Mon Feb 02 2015 - 17:16:21 PST)
- Kenneth Huang (Mon Feb 02 2015 - 11:57:15 PST)
[AMBER] antechamber error
- hannes.loeffler.stfc.ac.uk (Wed Feb 11 2015 - 00:14:56 PST)
- Harmeet Kaur (Tue Feb 10 2015 - 23:07:13 PST)
[AMBER] ANTECHAMBER: error in mol2 file
- hannes.loeffler.stfc.ac.uk (Fri Feb 20 2015 - 04:12:13 PST)
- Valentina Romano (Fri Feb 20 2015 - 03:56:49 PST)
- hannes.loeffler.stfc.ac.uk (Fri Feb 20 2015 - 03:05:29 PST)
- Valentina Romano (Fri Feb 20 2015 - 01:59:45 PST)
[AMBER] Assignment of charges for Guanidine
- Daniel Roe (Sun Feb 08 2015 - 15:42:54 PST)
- Jason Swails (Sun Feb 08 2015 - 13:15:08 PST)
- Ibrahim Said (Sun Feb 08 2015 - 10:01:28 PST)
- David Case (Sat Feb 07 2015 - 18:03:46 PST)
- Jason Swails (Sat Feb 07 2015 - 16:03:16 PST)
- Ibrahim Said (Sat Feb 07 2015 - 14:19:32 PST)
- Jason Swails (Sat Feb 07 2015 - 05:23:20 PST)
- Ibrahim Said (Sat Feb 07 2015 - 00:16:39 PST)
- Jason Swails (Fri Feb 06 2015 - 11:19:06 PST)
- Ibrahim Said (Fri Feb 06 2015 - 11:02:24 PST)
- Daniel Roe (Fri Feb 06 2015 - 08:23:57 PST)
- Ibrahim Said (Fri Feb 06 2015 - 07:54:14 PST)
[AMBER] assignment of Water molecules
- David A Case (Fri Feb 13 2015 - 09:25:36 PST)
- Ibrahim Said (Fri Feb 13 2015 - 04:13:47 PST)
[AMBER] atomicfluct issue
- Daniel Roe (Mon Feb 23 2015 - 07:31:38 PST)
- Vlad Cojocaru (Mon Feb 23 2015 - 05:56:42 PST)
- George Tzotzos (Mon Feb 23 2015 - 05:30:04 PST)
[AMBER] Average Internal Coordinates in cpptraj
- Dr. Robert Molt Jr. (Mon Feb 09 2015 - 08:50:17 PST)
- Carlos Simmerling (Mon Feb 09 2015 - 08:49:17 PST)
- Dr. Robert Molt Jr. (Mon Feb 09 2015 - 08:37:52 PST)
[AMBER] Bad atom type error in MMPBSA
- Kenneth Huang (Thu Feb 19 2015 - 09:51:55 PST)
- Jason Swails (Wed Feb 18 2015 - 14:09:11 PST)
- Kenneth Huang (Wed Feb 18 2015 - 13:02:48 PST)
[AMBER] bad atom type: OA
- Houcemeddine Othman (Wed Feb 04 2015 - 04:26:09 PST)
[AMBER] bash scripting for MD tasks
- James Starlight (Thu Feb 05 2015 - 06:10:34 PST)
[AMBER] Bond Energy Term for a TIP3P Water
- David A Case (Wed Feb 25 2015 - 05:30:42 PST)
- Zhang, Sixue (Tue Feb 24 2015 - 16:51:16 PST)
- Zhang, Sixue (Tue Feb 24 2015 - 13:08:17 PST)
- Jason Swails (Tue Feb 24 2015 - 11:58:12 PST)
- Zhang, Sixue (Tue Feb 24 2015 - 11:37:18 PST)
- Zhang, Sixue (Tue Feb 24 2015 - 11:30:55 PST)
[AMBER] calculating HB lifetime
- Daniel Roe (Thu Feb 12 2015 - 07:40:24 PST)
- Vijay Achari (Thu Feb 12 2015 - 07:39:18 PST)
- Vijay Achari (Thu Feb 12 2015 - 07:37:13 PST)
- Vijay Achari (Thu Feb 12 2015 - 07:28:08 PST)
- Daniel Roe (Thu Feb 12 2015 - 07:22:42 PST)
- Vijay Achari (Thu Feb 12 2015 - 07:19:12 PST)
- Daniel Roe (Thu Feb 12 2015 - 07:06:44 PST)
- Daniel Roe (Thu Feb 12 2015 - 06:51:52 PST)
- Vijay Achari (Thu Feb 12 2015 - 01:19:13 PST)
- Vijay Achari (Thu Feb 12 2015 - 00:09:58 PST)
- Daniel Roe (Wed Feb 11 2015 - 21:46:16 PST)
- Vijay Achari (Wed Feb 11 2015 - 17:32:23 PST)
- Daniel Roe (Wed Feb 11 2015 - 10:21:56 PST)
- Vijay Achari (Wed Feb 11 2015 - 09:35:50 PST)
- Daniel Roe (Wed Feb 11 2015 - 08:44:05 PST)
- Vijay Achari (Wed Feb 11 2015 - 02:18:08 PST)
[AMBER] Calculation of the number of internal waters during md simulation
- James Starlight (Thu Feb 26 2015 - 07:12:17 PST)
- Daniel Roe (Wed Feb 25 2015 - 07:12:33 PST)
- James Starlight (Wed Feb 25 2015 - 07:00:31 PST)
- James Starlight (Fri Feb 13 2015 - 01:50:54 PST)
- Daniel Roe (Thu Feb 12 2015 - 07:59:45 PST)
- James Starlight (Tue Feb 10 2015 - 10:36:06 PST)
- James Starlight (Tue Feb 10 2015 - 09:23:24 PST)
- Daniel Roe (Tue Feb 10 2015 - 06:43:25 PST)
- James Starlight (Tue Feb 10 2015 - 04:58:19 PST)
- Daniel Roe (Fri Feb 06 2015 - 09:52:11 PST)
- James Starlight (Fri Feb 06 2015 - 01:05:28 PST)
- James Starlight (Fri Feb 06 2015 - 00:23:39 PST)
- Daniel Roe (Thu Feb 05 2015 - 08:06:29 PST)
- Daniel Roe (Thu Feb 05 2015 - 08:02:55 PST)
- James Starlight (Thu Feb 05 2015 - 01:24:22 PST)
- James Starlight (Wed Feb 04 2015 - 01:30:51 PST)
- James Starlight (Tue Feb 03 2015 - 08:38:02 PST)
- Daniel Roe (Tue Feb 03 2015 - 08:12:39 PST)
- James Starlight (Tue Feb 03 2015 - 07:54:03 PST)
[AMBER] Can cpptraj-hbond report the lifetimes of H-bonds between protein and water?
- Jose Borreguero (Tue Feb 17 2015 - 12:36:41 PST)
- Daniel Roe (Tue Feb 17 2015 - 09:45:27 PST)
- Jose Borreguero (Tue Feb 17 2015 - 07:57:46 PST)
[AMBER] Can I use the presence of a particular hydrogen bond as a condition to filter out frames?
- Daniel Roe (Tue Feb 24 2015 - 13:57:00 PST)
- Jose Borreguero (Tue Feb 24 2015 - 11:34:10 PST)
- Daniel Roe (Tue Feb 24 2015 - 11:20:39 PST)
- Jose Borreguero (Tue Feb 24 2015 - 11:09:05 PST)
- Daniel Roe (Tue Feb 24 2015 - 10:51:40 PST)
- Jose Borreguero (Tue Feb 24 2015 - 10:16:18 PST)
[AMBER] can not be a parameter fitting
- Jason Swails (Mon Feb 02 2015 - 05:28:22 PST)
- Takuya Uto (Sun Feb 01 2015 - 21:54:36 PST)
[AMBER] Can't get shell script to work with Lipid tutorial
- Chris Chris (Thu Feb 26 2015 - 09:52:14 PST)
[AMBER] Center of mass restraints work on pmemd.MPI, but not on the GPU
- Jason Swails (Fri Feb 27 2015 - 14:00:06 PST)
- Needham, Perri (Fri Feb 27 2015 - 13:19:23 PST)
- Jason Swails (Fri Feb 27 2015 - 12:06:51 PST)
- Needham, Perri (Fri Feb 27 2015 - 11:44:43 PST)
- Ross Walker (Wed Feb 25 2015 - 20:29:53 PST)
- mmaestre (Wed Feb 25 2015 - 20:19:51 PST)
[AMBER] Chamber problem
- Jason Swails (Tue Feb 24 2015 - 17:56:07 PST)
- Shukla, Saurabh (Tue Feb 24 2015 - 17:24:05 PST)
[AMBER] charmmlipid2amber.x
- Jason Swails (Fri Feb 06 2015 - 03:21:48 PST)
- Chris Chris (Thu Feb 05 2015 - 19:28:15 PST)
[AMBER] cis peptide bond
- Carlos Simmerling (Fri Feb 06 2015 - 10:07:14 PST)
- Dhiraj Srivastava (Fri Feb 06 2015 - 09:45:17 PST)
- Carlos Simmerling (Fri Feb 06 2015 - 09:32:53 PST)
- Dhiraj Srivastava (Fri Feb 06 2015 - 08:40:34 PST)
[AMBER] Closest residues to an atom in ptraj
- Daniel Roe (Wed Feb 25 2015 - 06:54:59 PST)
- Jason Swails (Wed Feb 25 2015 - 05:17:01 PST)
- Alessandra Lacetera (Wed Feb 25 2015 - 04:36:32 PST)
- Daniel Roe (Tue Feb 24 2015 - 11:59:35 PST)
- Alessandra Lacetera (Tue Feb 24 2015 - 11:42:06 PST)
[AMBER] Cofactor parametrization
- Jason Swails (Thu Feb 26 2015 - 08:22:08 PST)
- Francesca Tessaro (Thu Feb 26 2015 - 06:45:59 PST)
[AMBER] combining trajectories
- Daniel Roe (Tue Feb 17 2015 - 00:35:02 PST)
- Ayesha Fatima (Mon Feb 16 2015 - 22:19:31 PST)
- Vijay Achari (Mon Feb 16 2015 - 21:12:58 PST)
- Daniel Roe (Mon Feb 16 2015 - 10:53:20 PST)
- Ayesha Fatima (Mon Feb 16 2015 - 09:58:33 PST)
- Daniel Roe (Mon Feb 16 2015 - 09:00:14 PST)
- Mahmood Jasim (Mon Feb 16 2015 - 08:39:28 PST)
- Daniel Roe (Mon Feb 16 2015 - 08:25:02 PST)
- Ayesha Fatima (Mon Feb 16 2015 - 06:29:05 PST)
[AMBER] confusion in md run
- Jason Swails (Wed Feb 04 2015 - 02:00:49 PST)
- Robin Jain (Wed Feb 04 2015 - 00:12:43 PST)
[AMBER] Constructing a single Zwitterion in xleap
- hannes.loeffler.stfc.ac.uk (Sun Feb 01 2015 - 07:37:00 PST)
- Karl Kirschner (Sun Feb 01 2015 - 07:13:04 PST)
- Jason Swails (Sun Feb 01 2015 - 04:55:02 PST)
- Robert Molt (Sat Jan 31 2015 - 21:36:16 PST)
[AMBER] Could not find vdW (or other) parameters for type: Fe2+
- Pragya Priyadarshini (Sun Feb 15 2015 - 19:45:46 PST)
[AMBER] Could not find vdW (or other) parameters for type: Fe2+(Problem Solved)
- Pragya Priyadarshini (Sun Feb 15 2015 - 23:18:42 PST)
[AMBER] cpptraj hbond analysis
- Ayesha Fatima (Thu Feb 19 2015 - 01:59:46 PST)
- Daniel Roe (Wed Feb 18 2015 - 08:24:35 PST)
- Ayesha Fatima (Wed Feb 18 2015 - 07:42:28 PST)
[AMBER] cpptraj hbond lifetime problem
- Daniel Roe (Sun Feb 22 2015 - 07:58:12 PST)
- Ayesha Fatima (Sun Feb 22 2015 - 01:59:56 PST)
[AMBER] cpptraj: H-bond clarification sought
- George Tzotzos (Mon Feb 23 2015 - 10:40:16 PST)
- Daniel Roe (Mon Feb 23 2015 - 10:30:33 PST)
- George Tzotzos (Mon Feb 23 2015 - 10:12:33 PST)
[AMBER] Create a 2M urea box
- mmaestre.gate.sinica.edu.tw (Mon Feb 02 2015 - 23:41:20 PST)
- Jason Swails (Mon Feb 02 2015 - 17:01:33 PST)
- mmaestre.gate.sinica.edu.tw (Mon Feb 02 2015 - 15:36:05 PST)
- Ibrahim Said (Mon Feb 02 2015 - 12:33:06 PST)
[AMBER] Create a unit of mixture
- David A Case (Tue Feb 24 2015 - 14:42:38 PST)
- Ibrahim Said (Mon Feb 23 2015 - 10:56:59 PST)
[AMBER] Create one larger averaged trajectory file !
- Jason Swails (Sun Feb 01 2015 - 03:35:03 PST)
- Hadeer ELHabashy (Sun Feb 01 2015 - 02:36:25 PST)
[AMBER] csv file for DPC
- Sylvester Tumusiime (Fri Feb 13 2015 - 12:41:39 PST)
[AMBER] CUDA 5.0 vs 6.5
- Novosielski, Ryan (Thu Feb 05 2015 - 12:59:46 PST)
- Ross Walker (Thu Feb 05 2015 - 12:54:30 PST)
- Ryan Novosielski (Thu Feb 05 2015 - 12:48:03 PST)
[AMBER] CUDA- Error pmemd Lipid Membrane
- Ross Walker (Thu Feb 26 2015 - 19:36:26 PST)
- Parker de Waal (Thu Feb 26 2015 - 19:27:07 PST)
- Romero, Raquel (Thu Feb 26 2015 - 18:02:11 PST)
[AMBER] d
- Lachele Foley (Fri Feb 13 2015 - 22:51:08 PST)
- Jason Swails (Fri Feb 13 2015 - 13:46:37 PST)
- 김준기 (Fri Feb 13 2015 - 07:26:27 PST)
[AMBER] Density equilibration crash in cuda
- Jason Swails (Wed Feb 11 2015 - 04:41:16 PST)
- Kshatresh Dutta Dubey (Wed Feb 11 2015 - 04:09:57 PST)
- Jason Swails (Wed Feb 11 2015 - 04:05:55 PST)
- Kshatresh Dutta Dubey (Wed Feb 11 2015 - 03:36:33 PST)
[AMBER] Disentangling domains
- mmaestre (Tue Feb 10 2015 - 01:17:04 PST)
[AMBER] Distance/Angle distribution along the trajectory using cpptraj
- Daniel Roe (Wed Feb 18 2015 - 05:31:18 PST)
- Parker de Waal (Wed Feb 18 2015 - 05:08:44 PST)
- James Starlight (Wed Feb 18 2015 - 02:53:15 PST)
- Nhai (Wed Feb 18 2015 - 02:50:50 PST)
- James Starlight (Wed Feb 18 2015 - 01:51:28 PST)
[AMBER] dont have atom type
- Jason Swails (Mon Feb 16 2015 - 05:32:49 PST)
- Fatemeh Sadat Alavi (Mon Feb 16 2015 - 04:44:10 PST)
[AMBER] error in equil.rst steps of AMBER
- David A Case (Mon Feb 02 2015 - 06:59:21 PST)
- Daniel Roe (Mon Feb 02 2015 - 06:52:04 PST)
- Shreeramesh (Mon Feb 02 2015 - 06:32:51 PST)
[AMBER] Error while running antechamber and tleap for silver salt of carboxylic acid
- Hannes Loeffler (Wed Feb 04 2015 - 05:38:53 PST)
- Shreeramesh (Wed Feb 04 2015 - 04:25:24 PST)
- Hannes Loeffler (Wed Feb 04 2015 - 03:52:03 PST)
- Shreeramesh (Wed Feb 04 2015 - 03:06:06 PST)
[AMBER] Error while running MD for carboxylate anion
- Jason Swails (Fri Feb 06 2015 - 03:25:34 PST)
- Shreeramesh (Fri Feb 06 2015 - 01:25:44 PST)
[AMBER] Error while running tleap for carboxylate anion
- Marc van der Kamp (Thu Feb 05 2015 - 01:23:27 PST)
- Shreeramesh (Thu Feb 05 2015 - 01:18:37 PST)
[AMBER] Error while running tleap for the ligand containing two chlorine atoms
- Jason Swails (Sat Feb 21 2015 - 09:32:29 PST)
- Shreeramesh (Sat Feb 21 2015 - 07:41:08 PST)
- Shreeramesh (Sat Feb 21 2015 - 07:29:47 PST)
- Jason Swails (Fri Feb 20 2015 - 07:48:24 PST)
- David A Case (Fri Feb 20 2015 - 07:40:16 PST)
- David A Case (Fri Feb 20 2015 - 07:38:47 PST)
- Jason Swails (Fri Feb 20 2015 - 05:34:06 PST)
- David A Case (Fri Feb 20 2015 - 05:24:50 PST)
- Jason Swails (Fri Feb 20 2015 - 05:08:12 PST)
- hannes.loeffler.stfc.ac.uk (Fri Feb 20 2015 - 05:07:26 PST)
- Shreeramesh (Fri Feb 20 2015 - 04:33:05 PST)
- hannes.loeffler.stfc.ac.uk (Fri Feb 20 2015 - 03:39:04 PST)
- Shreeramesh (Fri Feb 20 2015 - 03:23:44 PST)
- hannes.loeffler.stfc.ac.uk (Fri Feb 20 2015 - 03:13:31 PST)
- Shreeramesh (Fri Feb 20 2015 - 02:58:03 PST)
[AMBER] Error: Expected DCD block size of 48, got -1029941464
- Thomas Evangelidis (Mon Feb 23 2015 - 09:16:24 PST)
- Daniel Roe (Mon Feb 23 2015 - 07:38:53 PST)
- Thomas Evangelidis (Sat Feb 21 2015 - 16:04:48 PST)
- Daniel Roe (Sat Feb 21 2015 - 13:50:10 PST)
- Thomas Evangelidis (Sat Feb 21 2015 - 13:21:06 PST)
- Thomas Evangelidis (Sat Feb 21 2015 - 13:06:03 PST)
[AMBER] Error: Restart File Corrupted
- Daniel Roe (Fri Feb 13 2015 - 12:32:35 PST)
- Edward Kalkreuter (Fri Feb 13 2015 - 10:03:10 PST)
[AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
- Jason Swails (Fri Feb 27 2015 - 05:27:36 PST)
- vijay kumar narsapuram (Fri Feb 27 2015 - 05:25:45 PST)
- Jason Swails (Fri Feb 27 2015 - 05:15:02 PST)
- vijay kumar narsapuram (Fri Feb 27 2015 - 05:11:21 PST)
- Jason Swails (Mon Feb 23 2015 - 07:56:04 PST)
- vijay kumar narsapuram (Mon Feb 23 2015 - 06:45:40 PST)
- Jason Swails (Mon Feb 23 2015 - 05:26:40 PST)
- vijay kumar narsapuram (Mon Feb 23 2015 - 04:49:54 PST)
- Jason Swails (Mon Feb 02 2015 - 06:07:51 PST)
- vijay kumar narsapuram (Mon Feb 02 2015 - 05:48:46 PST)
- vijay kumar narsapuram (Mon Feb 02 2015 - 05:47:12 PST)
- Jason Swails (Mon Feb 02 2015 - 05:16:52 PST)
- David A Case (Mon Feb 02 2015 - 05:15:12 PST)
- vijay kumar narsapuram (Sun Feb 01 2015 - 22:15:41 PST)
- Daniel Roe (Sun Feb 01 2015 - 15:27:36 PST)
- vijay kumar narsapuram (Sun Feb 01 2015 - 12:59:16 PST)
[AMBER] ERRORS AND FATAL ERRORS (Apparently died to faulty connections)
- Jason Swails (Fri Feb 13 2015 - 13:58:18 PST)
- Evans, Shalton (Fri Feb 13 2015 - 13:30:13 PST)
- Jason Swails (Thu Feb 05 2015 - 04:28:49 PST)
- Evans, Shalton (Wed Feb 04 2015 - 22:22:39 PST)
[AMBER] FATAL: Atom .R<GRA 1>.A<H31 197> does not have a type.
- Wei Ye (Thu Feb 26 2015 - 22:59:18 PST)
- Evans, Shalton (Thu Feb 26 2015 - 22:51:43 PST)
[AMBER] FATAL: Atom .R<RU5 13>.A<P 29> does not have a type.
- Mahad Gatti Iou (Thu Feb 05 2015 - 08:58:31 PST)
[AMBER] Forcefield for DNA
- Petr Jurecka (Wed Feb 04 2015 - 06:34:55 PST)
- Nihal Korkmaz (Sun Feb 01 2015 - 11:25:18 PST)
[AMBER] Forces from Potential
- Jason Swails (Wed Feb 18 2015 - 09:39:34 PST)
- Ahmed Ayoub (Wed Feb 18 2015 - 08:39:13 PST)
[AMBER] Fwd: Amber tleap error
- Garisekurthi Satheesh (Mon Feb 23 2015 - 21:01:41 PST)
- David A Case (Mon Feb 23 2015 - 05:47:30 PST)
- Garisekurthi Satheesh (Sun Feb 22 2015 - 19:30:09 PST)
[AMBER] Fwd: MMPBSA
- Ray Luo, Ph.D. (Wed Feb 11 2015 - 13:32:14 PST)
- Jason Swails (Wed Feb 11 2015 - 04:03:22 PST)
- a.mohseni (Wed Feb 11 2015 - 00:59:55 PST)
[AMBER] Fwd: Simulations in CCl4
- pradeep pant (Wed Feb 18 2015 - 04:25:21 PST)
[AMBER] GTX980 PERFORMANCE
- Ross Walker (Fri Feb 27 2015 - 09:05:53 PST)
- carmendigiovanni75.alice.it (Fri Feb 27 2015 - 05:31:01 PST)
[AMBER] H-REMD failure on GPU
- Jason Swails (Thu Feb 26 2015 - 05:51:49 PST)
- Carlo Guardiani (Wed Feb 25 2015 - 08:57:43 PST)
[AMBER] harmonic restraint file
- abdennour braka (Tue Feb 03 2015 - 05:26:29 PST)
- David A Case (Tue Feb 03 2015 - 05:14:52 PST)
- abdennour braka (Tue Feb 03 2015 - 02:47:58 PST)
[AMBER] have not atom type
- David A Case (Wed Feb 04 2015 - 04:58:42 PST)
- Fatemeh Sadat Alavi (Tue Feb 03 2015 - 22:20:36 PST)
[AMBER] hbond analysis
- Ayesha Fatima (Sat Feb 21 2015 - 08:39:13 PST)
- Daniel Roe (Fri Feb 20 2015 - 12:59:29 PST)
- Ayesha Fatima (Fri Feb 20 2015 - 05:37:40 PST)
- Ayesha Fatima (Sat Feb 14 2015 - 04:28:05 PST)
- Ayesha Fatima (Fri Feb 13 2015 - 06:40:21 PST)
- Jason Swails (Fri Feb 13 2015 - 02:04:55 PST)
- Ayesha Fatima (Thu Feb 12 2015 - 23:48:42 PST)
[AMBER] Help calculating RMSD between two proteins
- Daniel Roe (Thu Feb 19 2015 - 13:43:34 PST)
- Jason Swails (Thu Feb 19 2015 - 13:38:59 PST)
- Hai Nguyen (Thu Feb 19 2015 - 13:28:09 PST)
- Nicole Ippolito (Thu Feb 19 2015 - 13:20:33 PST)
- Daniel Roe (Thu Feb 19 2015 - 12:00:43 PST)
- Hai Nguyen (Thu Feb 19 2015 - 11:55:20 PST)
- Kenneth Huang (Thu Feb 19 2015 - 11:00:03 PST)
- Nicole Ippolito (Thu Feb 19 2015 - 10:09:29 PST)
[AMBER] Help creating custom monosaccharide unit in Glycam
- Gustavo Seabra (Fri Feb 20 2015 - 11:23:30 PST)
- Lachele Foley (Fri Feb 20 2015 - 10:39:34 PST)
- Gustavo Seabra (Thu Feb 19 2015 - 03:42:38 PST)
- Lachele Foley (Wed Feb 18 2015 - 19:16:23 PST)
- Gustavo Seabra (Wed Feb 18 2015 - 10:54:40 PST)
[AMBER] Help in choosing right MD tool
- David A Case (Tue Feb 24 2015 - 14:37:55 PST)
- anu chandra (Tue Feb 24 2015 - 04:22:24 PST)
- David A Case (Mon Feb 23 2015 - 07:29:35 PST)
- anu chandra (Mon Feb 23 2015 - 04:09:04 PST)
[AMBER] help in sdf
- Jason Swails (Sat Feb 28 2015 - 13:15:18 PST)
- Robin Jain (Sat Feb 28 2015 - 08:39:58 PST)
[AMBER] How to find out buried waters?
- Jose Borreguero (Mon Feb 09 2015 - 14:45:52 PST)
- Jason Swails (Mon Feb 09 2015 - 13:25:08 PST)
- Jose Borreguero (Mon Feb 09 2015 - 12:40:35 PST)
[AMBER] how to find out if a prmtop file was created with ff12 or ff14
- David A Case (Mon Feb 23 2015 - 10:01:36 PST)
- Jason Swails (Mon Feb 23 2015 - 09:41:47 PST)
- Thomas Evangelidis (Mon Feb 23 2015 - 08:27:37 PST)
[AMBER] Inability to use antechamber on Anion
- hannes.loeffler.stfc.ac.uk (Sat Feb 28 2015 - 00:19:57 PST)
- Robert Molt (Fri Feb 27 2015 - 18:04:32 PST)
[AMBER] Inexperienced User Trying to Solve Simulation Blowup
- Jason Swails (Sun Feb 08 2015 - 20:16:24 PST)
- Robert Molt (Sun Feb 08 2015 - 20:02:03 PST)
[AMBER] Invitation for proposing a book chapter
- Maryam Hamzehee (Mon Feb 23 2015 - 23:20:20 PST)
[AMBER] Invitation to Attend Computational Chemical Biology Conference (Aug 6th to 9th 2015), Cairns, Australia (http://tinyurl.com/nyblv7o)
- Ross Walker (Tue Feb 17 2015 - 08:26:26 PST)
[AMBER] ired t1 relaxation time
- Khanna, Tarun (Thu Feb 19 2015 - 10:56:57 PST)
[AMBER] Issue during mmgbsa decomposition
- James Starlight (Tue Feb 03 2015 - 12:38:31 PST)
- Kenneth Huang (Tue Feb 03 2015 - 11:24:09 PST)
- James Starlight (Tue Feb 03 2015 - 07:38:36 PST)
- Kenneth Huang (Tue Feb 03 2015 - 07:22:31 PST)
- James Starlight (Tue Feb 03 2015 - 00:09:11 PST)
- James Starlight (Mon Feb 02 2015 - 04:26:49 PST)
[AMBER] LAST CALL: Free Energy Workshop, Münster, March 9-11, 2015
- Vlad Cojocaru (Tue Feb 03 2015 - 12:35:33 PST)
[AMBER] LIPID14 and ff15SB
- Ghulam Mustafa (Fri Feb 20 2015 - 09:06:35 PST)
[AMBER] Lipid14 POPE lipids
- Ross Walker (Fri Feb 27 2015 - 08:58:09 PST)
- Joseph Baker (Fri Feb 27 2015 - 08:29:45 PST)
- Ross Walker (Fri Feb 20 2015 - 12:58:21 PST)
- Gould, Ian R (Fri Feb 20 2015 - 06:31:26 PST)
- Joseph Baker (Fri Feb 20 2015 - 04:42:09 PST)
[AMBER] list of atomic coordinates involved in solvent accessible area
- David A Case (Wed Feb 11 2015 - 19:36:26 PST)
- Iqbal, Muhammad Sajid (Wed Feb 11 2015 - 14:26:51 PST)
[AMBER] MCPB
- chemjxn.126.com (Fri Feb 06 2015 - 00:21:14 PST)
[AMBER] MD cis-azobenzene error
- Jason Swails (Wed Feb 04 2015 - 15:43:35 PST)
- Anya Leach (Wed Feb 04 2015 - 13:38:43 PST)
[AMBER] MD JOB was terminated before achieving the No. of steps
- Ross Walker (Fri Feb 06 2015 - 12:56:30 PST)
- Shreeramesh (Fri Feb 06 2015 - 01:28:53 PST)
[AMBER] memory issue in mmpbsa_py_nabnmode
- Marek Maly (Fri Feb 20 2015 - 06:48:51 PST)
- Jason Swails (Tue Feb 17 2015 - 18:58:18 PST)
- Marek Maly (Tue Feb 17 2015 - 18:18:22 PST)
- Jason Swails (Tue Feb 17 2015 - 16:15:37 PST)
- Marek Maly (Tue Feb 17 2015 - 13:42:17 PST)
- Jason Swails (Tue Feb 17 2015 - 13:21:43 PST)
- Marek Maly (Tue Feb 17 2015 - 12:09:52 PST)
- Jason Swails (Tue Feb 17 2015 - 10:18:56 PST)
- Jason Swails (Tue Feb 17 2015 - 10:17:35 PST)
- Marek Maly (Tue Feb 17 2015 - 07:30:02 PST)
- Marek Maly (Thu Feb 12 2015 - 15:00:29 PST)
- Jason Swails (Thu Feb 12 2015 - 14:44:14 PST)
- Marek Maly (Thu Feb 12 2015 - 14:14:51 PST)
- Jason Swails (Thu Feb 12 2015 - 05:48:49 PST)
- Marek Maly (Tue Feb 10 2015 - 07:49:44 PST)
- Jason Swails (Mon Feb 09 2015 - 19:51:23 PST)
- David A Case (Mon Feb 09 2015 - 17:28:37 PST)
- Marek Maly (Mon Feb 09 2015 - 15:54:20 PST)
[AMBER] missing atom of heme
- David A Case (Sun Feb 01 2015 - 05:48:41 PST)
- Fatemeh Sadat Alavi (Sun Feb 01 2015 - 00:14:31 PST)
[AMBER] MMGBSA question
- Jason Swails (Mon Feb 16 2015 - 13:51:57 PST)
- George Tzotzos (Mon Feb 16 2015 - 11:53:26 PST)
- George Tzotzos (Mon Feb 16 2015 - 11:11:28 PST)
[AMBER] MMGBSA: calculation of deltaG of ligand binding at dimer interface
- Jason Swails (Thu Feb 26 2015 - 11:32:49 PST)
- George Tzotzos (Thu Feb 26 2015 - 10:08:57 PST)
- Jason Swails (Thu Feb 26 2015 - 09:21:34 PST)
- George Tzotzos (Thu Feb 26 2015 - 09:16:50 PST)
- Jason Swails (Thu Feb 26 2015 - 08:11:12 PST)
- George Tzotzos (Thu Feb 26 2015 - 07:46:45 PST)
[AMBER] MMPBSA - standard deviation (again)
- Jason Swails (Thu Feb 12 2015 - 08:56:18 PST)
- George Tzotzos (Thu Feb 12 2015 - 07:29:31 PST)
- Jason Swails (Thu Feb 12 2015 - 06:49:15 PST)
- George Tzotzos (Thu Feb 12 2015 - 06:29:04 PST)
[AMBER] MMPBSA pairwise decomposition error
- George Tzotzos (Tue Feb 17 2015 - 12:00:34 PST)
[AMBER] New web server for setup of membrane simulation systems
- Jochen Hub (Wed Feb 18 2015 - 02:22:22 PST)
- Jochen Hub (Sun Feb 08 2015 - 03:32:28 PST)
[AMBER] no parameter for nicotine
- Jason Swails (Wed Feb 04 2015 - 02:12:23 PST)
- Ashutosh Shandilya (Wed Feb 04 2015 - 02:11:27 PST)
- Harmeet Kaur (Wed Feb 04 2015 - 02:07:40 PST)
[AMBER] Number of molecules for md calculations
- Ibrahim Said (Wed Feb 11 2015 - 08:57:30 PST)
[AMBER] On the collective dynamics in terms of NMA and PCA
- James Starlight (Thu Feb 26 2015 - 03:04:34 PST)
- Jason Swails (Tue Feb 24 2015 - 18:02:32 PST)
- David A Case (Tue Feb 24 2015 - 14:39:54 PST)
- James Starlight (Tue Feb 24 2015 - 02:23:55 PST)
[AMBER] On the crushing of the membrane protein simulation
- James Starlight (Tue Feb 10 2015 - 09:31:00 PST)
- Ross Walker (Tue Feb 10 2015 - 09:06:38 PST)
- James Starlight (Tue Feb 10 2015 - 07:44:01 PST)
[AMBER] Output Forces Acting of Each Atom During MD Simulation using Amber14
- Jason Swails (Sun Feb 08 2015 - 18:00:41 PST)
- Emmanuel (Sun Feb 08 2015 - 16:05:23 PST)
[AMBER] Parallel GPU calculation
- Novosielski, Ryan (Fri Feb 27 2015 - 06:59:00 PST)
- Jason Swails (Fri Feb 27 2015 - 06:59:02 PST)
- Stefano Motta (Fri Feb 27 2015 - 06:14:12 PST)
- Jason Swails (Fri Feb 27 2015 - 05:06:09 PST)
- Stefano Motta (Fri Feb 27 2015 - 03:46:42 PST)
[AMBER] parameterization
- David A Case (Mon Feb 02 2015 - 06:52:18 PST)
- Jason Swails (Mon Feb 02 2015 - 05:22:29 PST)
- chemjxn.126.com (Sun Feb 01 2015 - 23:22:40 PST)
[AMBER] pbsa
- David A Case (Sun Feb 15 2015 - 14:40:17 PST)
- zahra khatti (Sun Feb 15 2015 - 10:53:34 PST)
- zahra khatti (Sun Feb 15 2015 - 09:44:13 PST)
- zahra khatti (Sun Feb 15 2015 - 06:48:24 PST)
- Jason Swails (Sun Feb 15 2015 - 05:37:39 PST)
- zahra khatti (Sat Feb 14 2015 - 21:31:46 PST)
[AMBER] pmemd.cuda error cudaMemcpy GpuBuffer::
- David A Case (Thu Feb 19 2015 - 05:03:06 PST)
- BERGY (Tue Feb 17 2015 - 10:56:44 PST)
- Ross Walker (Sat Feb 14 2015 - 10:38:53 PST)
- BERGY (Sat Feb 14 2015 - 09:43:50 PST)
- Ross Walker (Sat Feb 14 2015 - 05:49:46 PST)
- BERGY (Fri Feb 13 2015 - 22:38:35 PST)
[AMBER] pmemd.cuda.MPI interruption error!
- Ross Walker (Mon Feb 02 2015 - 16:31:49 PST)
- 汪盛 (Mon Feb 02 2015 - 16:13:45 PST)
[AMBER] pressure fluctuation problem
- Jason Swails (Mon Feb 16 2015 - 05:25:57 PST)
- Aditya Sarkar (Mon Feb 16 2015 - 04:25:16 PST)
- Jason Swails (Sun Feb 15 2015 - 05:35:20 PST)
- Aditya Sarkar (Sun Feb 15 2015 - 00:05:10 PST)
[AMBER] Problem in generating CCL4 solvent Box
- Jason Swails (Mon Feb 23 2015 - 03:21:40 PST)
- pradeep pant (Sun Feb 22 2015 - 23:05:52 PST)
- David A Case (Sun Feb 22 2015 - 13:16:54 PST)
- pradeep pant (Sun Feb 22 2015 - 10:02:44 PST)
[AMBER] Problem with Ambertools14
- Fugui (Sat Jan 31 2015 - 10:27:12 PST)
[AMBER] problem with nab
- Jason Swails (Wed Feb 11 2015 - 06:06:49 PST)
- Urszula Uciechowska (Wed Feb 11 2015 - 05:53:12 PST)
[AMBER] problem with RMSD for small molecule
- Daniel Roe (Thu Feb 19 2015 - 08:12:50 PST)
- David A Case (Thu Feb 19 2015 - 04:58:40 PST)
- Maryam Hamzehee (Thu Feb 19 2015 - 01:45:06 PST)
[AMBER] problem with running tutorial C1
- Daniel Roe (Sat Feb 28 2015 - 06:38:25 PST)
- Jason Swails (Sat Feb 28 2015 - 04:46:39 PST)
- Maryam Hamzehee (Sat Feb 28 2015 - 04:27:14 PST)
- Jason Swails (Sat Feb 28 2015 - 03:13:08 PST)
- Maryam Hamzehee (Fri Feb 27 2015 - 23:14:21 PST)
[AMBER] Problems with COM distance restraints plus positional restraints using pmemd.cuda
- mmaestre (Tue Feb 17 2015 - 01:27:08 PST)
[AMBER] protein falls apart on explicit solvation md
- Anupam Goel (Fri Feb 06 2015 - 12:28:56 PST)
- Daniel Roe (Fri Feb 06 2015 - 12:10:02 PST)
- Anupam Goel (Fri Feb 06 2015 - 12:04:36 PST)
[AMBER] Query regarding Dynamics Studies
- Ruchika Bhat (Fri Feb 06 2015 - 11:04:14 PST)
- Chris Chris (Fri Feb 06 2015 - 07:22:06 PST)
- Jason Swails (Fri Feb 06 2015 - 06:53:11 PST)
- Ruchika Bhat (Fri Feb 06 2015 - 05:03:26 PST)
[AMBER] Question about hbond analysis
- Daniel Roe (Sun Feb 15 2015 - 08:36:16 PST)
- 徐晓庶 (Sat Feb 14 2015 - 23:06:51 PST)
[AMBER] Question regarding the calculation of binding constants
- David A Case (Wed Feb 18 2015 - 07:41:18 PST)
- Kornelius Zeth (Tue Feb 17 2015 - 07:17:06 PST)
[AMBER] Real time event with amber mds with shake
- Hadeer ELHabashy (Fri Feb 06 2015 - 04:46:27 PST)
- Jason Swails (Thu Feb 05 2015 - 11:33:26 PST)
- Hadeer ELHabashy (Thu Feb 05 2015 - 10:44:16 PST)
- Jason Swails (Thu Feb 05 2015 - 04:55:13 PST)
- Hadeer ELHabashy (Thu Feb 05 2015 - 03:49:28 PST)
[AMBER] Regarding AmberTool 14 installation
- David A Case (Tue Feb 17 2015 - 07:00:25 PST)
- Jason Swails (Tue Feb 17 2015 - 06:54:53 PST)
- MOHD HOMAIDUR RAHMAN (Tue Feb 17 2015 - 00:08:40 PST)
[AMBER] Regarding ff02 force field and RESP method documentation
- David A Case (Mon Feb 23 2015 - 08:31:18 PST)
- Martin Olsson (Mon Feb 23 2015 - 07:50:13 PST)
[AMBER] REGARDING GAUSSIAN BASED SIDE CHAIN MODEL OPTIMIZATION
- Jason Swails (Wed Feb 04 2015 - 02:28:35 PST)
- Swithin Hanosh (Wed Feb 04 2015 - 01:30:08 PST)
- Pengfei Li (Tue Feb 03 2015 - 07:57:13 PST)
- Swithin Hanosh (Tue Feb 03 2015 - 07:06:12 PST)
[AMBER] REGARDING WARNINGS RETURNED DURING FORCE FIELD GENERATION
- David A Case (Tue Feb 24 2015 - 14:33:27 PST)
- Swithin Hanosh (Tue Feb 24 2015 - 11:19:27 PST)
[AMBER] REMD jobs crashing repeatedly on GPUs
- Scott Brozell (Fri Feb 27 2015 - 09:33:03 PST)
[AMBER] reparametrize water molecule near metal site
- David A Case (Mon Feb 02 2015 - 05:05:22 PST)
- Jorgen Simonsen (Sun Feb 01 2015 - 11:21:58 PST)
[AMBER] restraining the torsion
- David A Case (Wed Feb 18 2015 - 07:35:10 PST)
- Lara rajam (Wed Feb 18 2015 - 07:03:09 PST)
[AMBER] Restraint bugs after most recent patch
- Ross Walker (Fri Feb 06 2015 - 12:53:42 PST)
- Niel Henriksen (Thu Feb 05 2015 - 22:41:26 PST)
[AMBER] restraintmask error
- Jason Swails (Tue Feb 03 2015 - 06:51:34 PST)
- Urszula Uciechowska (Tue Feb 03 2015 - 06:45:53 PST)
[AMBER] reweighing aMD trajectory
- Jason Swails (Mon Feb 16 2015 - 10:03:37 PST)
- Asmita Gupta (Mon Feb 16 2015 - 07:46:43 PST)
[AMBER] rms: Warning: [rms] Not all arguments handled: [ rmsd.agr ]
- George Tzotzos (Sat Feb 21 2015 - 16:05:21 PST)
- George Tzotzos (Sat Feb 21 2015 - 13:57:18 PST)
- Daniel Roe (Sat Feb 21 2015 - 13:39:48 PST)
- George Tzotzos (Sat Feb 21 2015 - 13:14:45 PST)
[AMBER] rmsavgcorr
- Daniel Roe (Thu Feb 19 2015 - 08:11:34 PST)
- Jacopo Sgrignani (Thu Feb 19 2015 - 07:46:17 PST)
[AMBER] rotational diffusion
- Daniel Roe (Sun Feb 15 2015 - 08:51:51 PST)
- Vijay Achari (Fri Feb 13 2015 - 03:00:08 PST)
[AMBER] RV: segmentation fault when running parmchk
- Hannes Loeffler (Mon Feb 23 2015 - 02:59:33 PST)
- belen nieto (Mon Feb 23 2015 - 02:45:43 PST)
[AMBER] Sander in background
- Jason Swails (Fri Feb 20 2015 - 05:42:52 PST)
- Valentina Romano (Fri Feb 20 2015 - 05:36:28 PST)
[AMBER] SDPC and SAPC lipid bilayer
- Hector A. Baldoni (Fri Feb 27 2015 - 06:21:14 PST)
[AMBER] Second announcement: AMBER Workshop - Haifa Israel, Sun Apr 26th to 30th.
- Ross Walker (Tue Feb 03 2015 - 13:44:39 PST)
[AMBER] seek help
- David A Case (Wed Feb 04 2015 - 05:11:38 PST)
- 新生大侠 (Wed Feb 04 2015 - 03:42:57 PST)
[AMBER] Simulations in CCl4
- David A Case (Wed Feb 18 2015 - 06:13:54 PST)
- pradeep pant (Tue Feb 17 2015 - 23:14:38 PST)
[AMBER] single strand DNA in hairpin conformation
- David A Case (Fri Feb 20 2015 - 08:57:34 PST)
- Christina Bergonzo (Fri Feb 20 2015 - 06:47:08 PST)
- Urszula Uciechowska (Fri Feb 20 2015 - 05:46:52 PST)
- David A Case (Wed Feb 18 2015 - 12:27:24 PST)
- Urszula Uciechowska (Wed Feb 18 2015 - 08:55:42 PST)
- David A Case (Thu Feb 12 2015 - 04:24:56 PST)
- Urszula Uciechowska (Thu Feb 12 2015 - 01:13:02 PST)
[AMBER] solute-solvent hbond fraction value is more than 1.0
- Vijay Achari (Tue Feb 17 2015 - 20:37:34 PST)
- Daniel Roe (Tue Feb 17 2015 - 09:20:35 PST)
- Vijay Achari (Mon Feb 16 2015 - 23:14:55 PST)
[AMBER] Solvent Box Wrapping Issue
- David A Case (Sun Feb 22 2015 - 13:12:35 PST)
- Jonathan Sheehan (Sat Feb 21 2015 - 14:03:39 PST)
- Zhang, Sixue (Sat Feb 21 2015 - 09:21:32 PST)
- Bill Ross (Fri Feb 20 2015 - 14:02:00 PST)
- Daniel Roe (Fri Feb 20 2015 - 13:11:57 PST)
- Zhang, Sixue (Fri Feb 20 2015 - 13:04:43 PST)
[AMBER] Steered MD using the jar=1 option
- Joseph Baker (Fri Feb 27 2015 - 08:59:52 PST)
- Adrian Roitberg (Fri Feb 27 2015 - 08:13:04 PST)
- Joseph Baker (Thu Feb 26 2015 - 15:13:44 PST)
- Jason Swails (Tue Feb 24 2015 - 04:40:19 PST)
- Joseph Baker (Mon Feb 23 2015 - 15:20:52 PST)
- Adrian Roitberg (Mon Feb 23 2015 - 14:35:56 PST)
- Joseph Baker (Mon Feb 23 2015 - 14:32:46 PST)
- Adrian Roitberg (Mon Feb 23 2015 - 14:13:31 PST)
- Joseph Baker (Mon Feb 23 2015 - 14:07:08 PST)
[AMBER] Strange md and RMSD behavior
- Daniel Roe (Sun Feb 08 2015 - 15:39:10 PST)
- Hadeer ELHabashy (Sat Feb 07 2015 - 13:22:43 PST)
[AMBER] Test
- Andreas Goetz (Mon Feb 09 2015 - 07:41:57 PST)
[AMBER] torsion restrain
- Lara rajam (Mon Feb 16 2015 - 07:16:20 PST)
[AMBER] Umbrella Sampling
- Mahmood Jasim (Fri Feb 13 2015 - 04:36:08 PST)
[AMBER] Unexpected behavior of trajout after invoking filter: Bug?
- Daniel Roe (Tue Feb 24 2015 - 17:02:11 PST)
- Jose Borreguero (Tue Feb 24 2015 - 14:57:59 PST)
[AMBER] unexpected behaviour with antechamber
- David A Case (Wed Feb 11 2015 - 04:54:25 PST)
- Hannes Loeffler (Wed Feb 11 2015 - 02:18:34 PST)
- Hannes Loeffler (Tue Feb 10 2015 - 01:24:30 PST)
- David A Case (Mon Feb 09 2015 - 17:46:58 PST)
- Hannes Loeffler (Mon Feb 09 2015 - 08:31:07 PST)
[AMBER] vlimit exceeded for step
- David A Case (Mon Feb 23 2015 - 05:41:01 PST)
- Jason Swails (Mon Feb 23 2015 - 05:22:21 PST)
- Fatemeh Sadat Alavi (Mon Feb 23 2015 - 04:06:55 PST)
- Jason Swails (Sat Feb 21 2015 - 12:30:30 PST)
- Fatemeh Sadat Alavi (Sat Feb 21 2015 - 03:51:15 PST)
[AMBER] vmd_box_dims.sh
- David Case (Sat Feb 07 2015 - 17:54:09 PST)
- Chris Chris (Sat Feb 07 2015 - 09:57:27 PST)
- Chris Chris (Sat Feb 07 2015 - 08:27:03 PST)
- hannes.loeffler.stfc.ac.uk (Sat Feb 07 2015 - 01:12:50 PST)
- Chris Chris (Fri Feb 06 2015 - 20:18:22 PST)
[AMBER] Water diffusion - in 2D and 3D
- Vijay Achari (Fri Feb 13 2015 - 02:42:07 PST)
- Hannes Loeffler (Fri Feb 13 2015 - 02:20:55 PST)
- Vijay Achari (Fri Feb 13 2015 - 02:04:02 PST)
- hannes.loeffler.stfc.ac.uk (Fri Feb 13 2015 - 00:28:28 PST)
- Vijay Achari (Thu Feb 12 2015 - 22:11:24 PST)
[AMBER] Xeon Phi
- Ross Walker (Thu Feb 05 2015 - 13:27:24 PST)
- Novosielski, Ryan (Thu Feb 05 2015 - 13:07:07 PST)
- Ross Walker (Thu Feb 05 2015 - 12:57:40 PST)
- Ryan Novosielski (Thu Feb 05 2015 - 12:45:40 PST)
- Ross Walker (Wed Feb 04 2015 - 16:42:23 PST)
- Novosielski, Ryan (Wed Feb 04 2015 - 15:48:21 PST)
[AMBER] xleap syntax error
- Ahmet yıldırım (Thu Feb 05 2015 - 12:59:18 PST)
- Jason Swails (Thu Feb 05 2015 - 12:46:40 PST)
- Ahmet yıldırım (Thu Feb 05 2015 - 11:47:19 PST)
- David A Case (Thu Feb 05 2015 - 10:40:51 PST)
- Daniel Roe (Thu Feb 05 2015 - 10:25:55 PST)
- Ahmet yıldırım (Thu Feb 05 2015 - 09:26:53 PST)
[AMBER] 回复： MCPB
- wjli (Fri Feb 06 2015 - 02:01:10 PST)
[AMBER] 回复： seek help
- Jason Swails (Wed Feb 04 2015 - 08:01:25 PST)
- 新生大侠 (Wed Feb 04 2015 - 06:55:13 PST)
[AMBER] 回复：回复： seek help
- Jason Swails (Thu Feb 05 2015 - 04:25:11 PST)
- Jason Swails (Wed Feb 04 2015 - 20:23:34 PST)
- 新生大侠 (Wed Feb 04 2015 - 19:02:31 PST)
[AMBER] 回复：回复：回复： seek help
- 新生大侠 (Thu Feb 05 2015 - 06:09:07 PST)
- 新生大侠 (Wed Feb 04 2015 - 22:38:16 PST)

Amber Archive Feb 2015 by subject