Hello,
I am running MD of a protein with NADP+ as cofactor.
I have some troubles with the cofactor parametrization:
antechamber is not recognizing the charge of my mol2 file and as well pdb file.
So I decided to dowload the prep and frcmod files from Amber parameter database
but I don't know how to integrate them with my mol2 or pdb file.
Any suggestion would be kindly accepted,
Thank you,
Francesca
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Received on Thu Feb 26 2015 - 07:00:03 PST
