> On Feb 17, 2015, at 3:08 AM, MOHD HOMAIDUR RAHMAN <rahmanhpu.gmail.com> wrote:
>
> Dear All
>
> I have install Amber 12 and AmberTool12 in computer, now I want to only
> install AmberTool 14 in my personal laptop but during configuration it is
> showing following error.
>
> Checking for updates...
> Warning: AMBERHOME [None] differs from expected [/usr/local/sware/amber14].
> No changes will be made until this is fixed
> Checking for available patches online. This may take a few seconds...
> Proxy Password:
>
> Available AmberTools 14 patches:
>
> update.1.bz2, update.2, update.3, update.4, update.5, update.6, update.7,
> update.8, update.9, update.10,
> update.11, update.12, update.13, update.14.bz2, update.15, update.16,
> update.17, update.18, update.19, update.20,
> update.21, update.22, update.23, update.24, update.25, update.26
> There are patches available. Do you want to apply them now? [y/N]
> (Recommended Y)
> y
> Warning: AMBERHOME [None] differs from expected [/usr/local/sware/amber14].
> No changes will be made until this is fixed
> SetupError: Making changes has been disabled because AMBERHOME is not set
> correctly or the updater has been moved from AMBERHOME.
> Automatic patching failed! Check the errors before re-configuring
>
> I check the AMBERHOME path, it is right path where I already set
>
> rahman.rahman-R530-R730 /usr/local/sware/amber14 $ echo $AMBERHOME
> /usr/local/sware/amber14
This is actually not a sufficient test to check that an environment variable is set. It just checks that a variable with that name is set (i.e. it could just be a local shell variable and yield this behavior).
Your error message means that AMBERHOME is definitely not set as an environment variable. If you used the syntax
set AMBERHOME=/usr/local/sware/amber14
then this won't work. You need to use
export AMBERHOME=/usr/local/sware/amber14
For bash or
setenv AMBERHOME=/usr/local/sware/amber14
For csh.
HTH,
Jason
>
> rahman.rahman-R530-R730 /usr/local/sware $ md5sum AmberTools14.tar.bz2
>
> 589cc9bd17b15ce3f9604b0bdeea3bab AmberTools14.tar.bz2
>
> Please guide me to resolve this problem.
> Thank you in advance
> Regards
> Rahman
>
>
> '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
> *Md Homaidur Rahman*
> PhD Research Scholar
> Computational Biophysics Lab.
> Department of Biotechnology
> Indian Institute of Technology-Madras
> Chennai-600 036
> *Mobile No = +91- 7845991785*
> '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
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Received on Tue Feb 17 2015 - 07:00:02 PST
