Dear Amber !
I have went through the Torsion angle restrain from the tutorial 4.
I have understood of creating the 5 column file for mentioning the residue
detail and the
lower and the upper value for the torsion angle .
For PPA - Pseudo rotation phase angle when generating the makeANG_RST with
the option PPA I also checked the file in the path
$AMBERHOME/src/nmr_aux/prepare_input/tordef.lib has the predefined angles
for it
# PSEUDO-ROTATION PHASE defined in terms of the NU angles
PSEUDO CYT PPA NU0 NU1 NU2 NU3 NU4
I would like to give the torsion restrain to the GLYCAM carbohydrate pahse
angle ,
How to generate the restrain file for this residues in particular using
makeANG_RST
some insight may help me in better understanding
thank you
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Feb 18 2015 - 07:30:02 PST
