Re: [AMBER] single strand DNA in hairpin conformation

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 18 Feb 2015 15:27:24 -0500

On Wed, Feb 18, 2015, Urszula Uciechowska wrote:
>
>
> Where can I find the pseudoknot example in order to adopt it to hairpin.
> I checked CYANA but we do not have a license for this software.

The NAB pseudoknot is in section 39.2.2 of the Reference Manual. You can find
things like this by either scanning the table of contents, or just searching
for the word "pseudoknot" in the Amber14.pdf file.

...dac


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Received on Wed Feb 18 2015 - 12:30:02 PST
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